RNA id: XM_039811884.1


Basic Information

Item Value
RNA id XM_039811884.1
length 1690
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120565835
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24520634 ~ 24524358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAGAAAAACAAGGATTTAACTTAAGTAGAAAAGTTATTTCAATCAACTTAGAAAATATAGTTCTTCATATATTACCAATTCTGGGCAACAGGTGTTTGTGGGTCACTCACTGATGCAGTGGACATTAATCCTTTTCCTTGGTAGCTCCTTGGCTGTGACTACCTTGGGCTGGACATATCATTACTCAAAAACGACCATGAACTGGACCCAGGCCCGACGTTGGTGCCAAACCGATTACACAGACATGGTGGTTATCCAAAACCAGACAGAGAACGACTATCTGGTCTCCAAGTTGCCAAACAGAACTAGGAGTCCATATTATTGGATTGGAATCACTAAAAACCACATGAATGAAAATTGGACCTGGATTGGGAATAACAGCACGTGGGTTGGTGAGCAGTCATGGGCAGTAAATGAGCCCAATAACAACCACAGCAATGAGTTTTGTGTGGAGATCTATGTGAACACAGGACGAAACCGAGGGAAGTGGAATGATGAGAAATGTGCCCTACAAAAATACGCTGTTTGTTATAAAGCCCAATGTAATGCAACATCATGTGGCAGAGGAAGATGCCAGGAGATGATAGAAAACATAACCTGCCTCTGTGAACCTGGCTTTAAGGGAGATAGATGCCAAACAGCTATGGAATGCCCCCCTCTGTCTCAGCCTGATAACGGATACCTTAGCTGCTCGGGAGGAAACCTGACATTCAACTCAACCTGTCGATTTAAATGCTACCCAGGCTTCCTGATAATAGGCCCGCCAGATGTTACCTGTACTGTCACCGGGGTCTGGAGCGGCCCAAGACCTATTTGTACAAGCTATAAACAAGCTCTGTTAGCTGTCGTTGGGTGTGGAGCTCTCTCAGCCTTCTGCTGCATCTGCTTTTGCTGGATGAAACACAGAAAAAGAAAGAAACTTGCCCAAGTAAGGCAGCCTGAAGAAGCGACAAGTCCATCCACTGAGGCACAAGGATGAAGGACAACTGGGACCTCATTTATGTCTTATTAAAATATATCTATAATGACCCAAATGCAGTTACTCGTATTAACTTTAGTACATTGTTAAAGCCtctgaacaggtgttttcagttattctggctgattagactctTTTTAGgttgaaaattgaaattgtttCCACCAATAAGGATGACAAAGGTGTCATTAGTCCCGCCCAAACACGTGCAACAACACTAACAGTGGACTCAGAAAGATGTCAATCTATCCTGAAGGATTGGAAGAGTGTCATCCCCCCCAGCCAAAAACACTGGGCTAATGAACTCCTGTCGTACTGCACACCAGAAAAAATTAAATTGGGGAACTAGATGACTTTGAACTGATTTGGACTCCTTTTTTGAACATCCTGACCCAACTTGACATGACCTCAGACTAGATGTAAATCTATGCTTATTActgtttattctttattttatgattatttAATATCTTGCCTTGCGGAGAGagggtttttgttgtttgatttcgttgttttctttttgtttttgtgtcttgttaaatttaaactataaataaaatatataaaaaaaataaaagaaagatgTCAATCACTCAGTCTAACCACACCCACAAGAAAGGTCCAATCAGCCACATTAACAATAAACACCTGTGTAGGTGTTCAGGGCCTttttaatagacctttttcacggcagacatgttgacatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132089 lncRNA upstream 7601 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 155459 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 264553 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 306775 24211860 ~ 24213859 (+) True G97789
TU131962 lncRNA upstream 311344 24208229 ~ 24209290 (+) True G97788
TU132146 lncRNA downstream 114108 24638466 ~ 24642085 (+) True G97938
TU132243 lncRNA downstream 224670 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 260438 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 262973 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 309079 24833437 ~ 24835517 (+) False G98019
XM_039812307.1 mRNA upstream 1094 24515434 ~ 24519540 (+) True sele
XM_039810628.1 mRNA upstream 31883 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA upstream 31883 24481703 ~ 24488751 (+) False scyl3
XM_039810520.1 mRNA upstream 231945 24287104 ~ 24288689 (+) True foxd2
XM_039810519.1 mRNA upstream 239570 24278396 ~ 24281064 (+) True foxe3
XM_039812319.1 mRNA downstream 115 24524473 ~ 24531588 (+) True LOC120566076
XM_039812321.1 mRNA downstream 115 24524473 ~ 24531588 (+) False LOC120566076
XM_039812320.1 mRNA downstream 135 24524493 ~ 24531588 (+) False LOC120566076
XM_039811159.1 mRNA downstream 65968 24590326 ~ 24627700 (+) True atf6
XM_039812148.1 mRNA downstream 122512 24646870 ~ 24652453 (+) False LOC120565979
TU131697 other upstream 1042816 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1198725 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1944432 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1945486 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1945710 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 257560 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 327943 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 343659 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1008467 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1205900 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile