RNA id: XM_039811900.1


Basic Information

Item Value
RNA id XM_039811900.1
length 1525
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120565844
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15506857 ~ 15512275 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTTCCCAGGATGGGTAAACAGTTTCTGGTCCGGATACGTTTCAACTGGCGACTGCTTTTCCAAGGCCGGGCCCTCCTGTTCACAAACACCCTCAGCGGAGGAGTATTAATGTCGCTGGGAGATATCTTGGAGCAGAGCCGGCAGAACTTCAGAAAGTCACACAGAGTCCAAGACTGGAGGAGGAcagGCAACATGTTTATGGTGGGCTGCTCCCTGGGTCCACCGATCTACTGCTGGTACACCTGGCTGGACAAAGTGTTAGTGGGCAAAGCTCTGAAAACAGTTGGCAAGAAGGTTCTGGCAGACCAGCTGGTTGGCACACCGTTTTTGGGGATGTGGTATTTTTCAGGTATGGCTGTCATGGAGGAAGACACTATAACCGAAGGATTGAAGGAGTTTAAAGACAAATTCTGGGAAATGTACAGGGCCGACTGGTGTTTTTGGCCTCCAGCTCAGATGATCAACTTCTACTTCATCTCGCCCAAATTCCGCATCATTTTCATGAACTTTGCCGACTTAGTATGGTCCACCTATATCTCCAACCTCAAACACAGAGATGACAGCCACCCCACTGAGCAGGAATCAGACAGCAGTGCTGTGGATGTAGTCCTACAGCAGGAAGCGCTCCCACCGTCCAAACCTCTGGAGGCCAAAGCTTAGAGACGGAGTTCATGCTCAACTGTGAAGTCGCTCATTTCTATCTGTTCAAACTTTCTCACTTGTTTTGGGAGACTGTTATAACAGAGTGCTCTTTCCTCTGACAAACCGTTCCTCTCTAAGTTTAGAATGACCACATATTTctgtctgaactcagaggacttgagttagttagttagttagttcagttagtttaattttattgctgtgtcatgccaaacattttggcccatcccacatgggattacaagacaccacaaacttATTTAGCAAACGTCTTCCAGCCACATATACAAATCAtttggagaaatacatgaatacaaatatatacatacacacatatatacatacacatttataaatatacacacatacccacacacacacagtatatacagCGACTTGAAGTGTTTGAGTGGAAGTGCTGGAACACTTTTCCGTTCATGTTTGTAGTTTTAATGTCTCTCTGTCCAATTtgtctgtttatttatatttaaatgatGTGCACTCCTGTAGGAACATTCAACGATGAAAAGCTGTTTCACTGCCTGTCACGCTAATACTTCTGATTAtcgtagtgttttttttttttttttttatcacatccTAGGCAAGAATACAACTGCTGCTATTAACACAACATGCAACTTCCAGTTGTTGGGAGGGTTTGTAGTGTGAAATTCAAATCGTTGTTGTTGCAATCAAAGATTTAAACTGTACACCATCCAACAGAGGGGCATTCCTTTTATTTCTCTGCTGTTTTATGTTTCTGGTATAGTGTgacaaaaataatcattattgATGTGGAACAGTTTTCATGTTTTTGACACTTATAATGACCTATATAAACTTTGCCTTGAGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129093 lncRNA upstream 28700 15474594 ~ 15478157 (+) True G95710
TU129053 lncRNA upstream 117715 15387998 ~ 15389142 (+) True G95681
TU129007 lncRNA upstream 209664 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 238672 15222133 ~ 15268185 (+) False LOC120565370
TU129122 lncRNA downstream 116694 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 120638 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 122223 15634498 ~ 15635947 (+) True G95731
TU129130 lncRNA downstream 127477 15639752 ~ 15646044 (+) True G95735
XR_005640275.1 lncRNA downstream 164135 15676410 ~ 15681761 (+) True LOC120565654
XM_039812071.1 mRNA upstream 1636 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA upstream 1636 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA upstream 1636 15498038 ~ 15505221 (+) True mpv17l2
XM_039812466.1 mRNA upstream 34094 15470647 ~ 15472763 (+) True LOC120566177
XM_039812446.1 mRNA upstream 124078 15379515 ~ 15382779 (+) True lsm4
XM_039810132.1 mRNA downstream 876 15513151 ~ 15522405 (+) True LOC120564879
XM_039810232.1 mRNA downstream 11654 15523929 ~ 15632812 (+) True LOC120564959
XM_039810272.1 mRNA downstream 207914 15720189 ~ 15723206 (+) True LOC120564991
XM_039810903.1 mRNA downstream 259018 15771293 ~ 15775561 (+) True gamt
XM_039810159.1 mRNA downstream 376301 15888576 ~ 15896422 (+) False LOC120564897
XR_005640328.1 other upstream 590251 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 592824 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 885444 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2124113 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2286485 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 808219 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2343362 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2354273 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2356391 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2359435 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile