RNA id: XM_039811948.1


Basic Information

Item Value
RNA id XM_039811948.1
length 5957
RNA type mRNA
GC content 0.49
exon number 27
gene id cachd1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12896287 ~ 12994764 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgagccagggaaattcaaagAGGATTTTCAACTCGTTTGTGTATACTGAGAAGACATCAAACGGAGAGACAGAAGTGCAGCAGTTGGCCAAAAAGATCAGAGAAAAGTTTAACCGCTACCTGGATGTGGTGAACCGGAACAAACAGGTGGTGGAGGCCTCGTACACCGCTCACCTCACCTCTCCGCTCACTGCAATACAGGACTGCTGCTCCATACCTGCATCTATGATGGAgtttGATGGAAACTTCAATACCAACGTATCCAAGACCATCTGCTGTGACAGACTTTCCCCCAACGTCAACAGCCGAGCTTTTAACCCTGGACGGGACCTCAACTCagTTTTGGCAGACAACCTGAAGTCCAACCCGGGGATAAAGTGGCAGTACTTCAGCTCAGAGGAGGGCATCTTTACAGTCTTCCCTGCCCACAAGTTCCAGTGCAAGGGAAGTTACGAGCACCGCAGCAGgcctgtgtatgtgtctgcggTGCGTCCCCAGTCTAAACACATCGTGGTGATGGTGGACCACGGAGCGTCTGTAACGGACACCCAGCTTCAGATCGCCAGAGACTCAGCACTGGTCATCCTCAACGCTGTAGATGAACATGACAAGATCTCCATTTTGTCAGTGGCAGAGATGGTTCGCTCCTGTTCTCTGGACCAGTGCTATAAGAGTCTGCTCTCTCCGGCCACCAGCGAGACCAAAAGGAAGATGAGCACCTTCATCTCCAACATCAAGGCGTCTGATGGAGCCACACTGCACGCAGCCGGCTTCCAGAAGGCCTTCCAGCTGCTCCGAAACACCAGCAGTCTCTGCAAACAGACCACAGACATGGTGATCATCTACCTGTCGTCTGGCATCACATCTCGAGAGTCGTCGGAGCAGGAGAAGAGAGCGACGCTCACTGTGGTCAGAGAGGAGAACCGACACCTCAACAACTCGGTCATGATCCTAACATACGCTCTCATGAACGAGGGAGTAACAGGCCTCAAGGAGCTGGCCTTCTTGAGGGATCTCGCAGAGCAGAATTCGGTGAAATACGGCGTCGACCGAACTTCCGACCGAGACCGCTTATCTGCGGCATCCTCGTCCGGATCAGCCGGAGCTTCCATGATGCCGGTGGTGAAGGGAAGTATGATGGTTCTAAACCAGCTGAGCAACCTGGAGACGACAGTGGGCCGCTTCTACATTAACCTGCCCAATCGCATGATCGACCTGGCCCGCTTCAGCCTGCCCTACACTGACCCCATGGGAGATGGGTTTATCATGACCGTGAGCCGGCCGTGTTATTTCGGTAACCTGCTCCTGGGCGTGGTCGGGGTGGATGTGAACCTGGCCTACATCCTGGAGGATGTAACCTACTACCAAGACTCACTGGCTTCTTACACGTTCCTCATCGACAACAAAGGTTACACCCTGATGCATCCGTCACTGACACGGCCCTACTTGATGACCGAGCCTCCCCTTCACACTGACATTATCCACTACGAGAATATCCCAGGATTCCCTGTTGTCCGGCAGAACATCCTCAGcctcCCTCTGGGCAGTCAGGTCATTTCTGTCCCAGTCAACTCATCTCTGTCGTGGCACACCAACCGACTCCGGGACAGCAACAAAGAAGCATACAACGTCAGCTACGCCTGGAAACTGGTTCAGGACACGTCTTTCATCCTGTGCATCGTGTACGTGCAGCCGGAGATCCCAGTGAAGCATCTGAAGAACCTGAACACAGCTCCCAGCTCCAAGCTACTGTACCATCGTTTGGACCTGCTGGGTCAGCCCAGCTCCTGCCTGCACTTCAAGCAGCTTTCCACAGTTGAGTCCCCCACTGTGATGTTGGCAGCCGGTAGTTTCTCCTCTCCCTATGAGCACCTCAGTCAGCCCGAAACGAAGCGCATGGTGGAGCACTACACCGCCTACCTGAGTGACAACACCAGGCTCATAGCCAACCCAGGCCTCAAGTCCTCTGTCAGGAACGAGGTTATGGCGACCAGTCACGTCACGGATGAGTGGATGACACTAATGGAAATGAGTAGCCTCAACTGCTACATTGTGCGCCGTTACATAGCAACGCCCAGTGGGGTGCTCCGGATTTACCCGGGATCACTGATGGACAAAGCCTTCGACCCGACCCGCAGACAATGGTACCAGCATGCTGTGGCTAACCCTGGCCTCATCACCTTCACGGGACCGTACCTGGATGTAGGCGGGGCGGGCTACGTTGTCACCATCAGCCACACCATCCATGCCTCCagCTCTCAGATGGCCCCTGGTTACGCAATTGCAGTGATGGGTATAGACTTCACTCTACGCTACTTCTATAAGGTCCTACTGGACCTGCTGCCCATCTGCAACCAGGACAAAGGAAACAAGATCAGGTGCTTCATAATGGAGGACAGAGGGTACCTGGTCGCTCACCCCACTCTCATTGACCCCAAAGGTCACGCCCCTGCAGAGCAACAGCACATAACACACAAGGAGCCGCTGGTGGCTAACGACATCCTGAACCACCCCAACTTTGTCAAGAAGAACCTATGTAACAGCTTCAGTGACCGCACCGTGCAGCGCTTCTACAAGTTCAACACCAGCATAATGGGGGACCTTACCAACCTGGTCCATGGTAGCCATTGTTCCAAGTACCGTCTGACCCGAATCCCCGGCACGAACGCCTTCGCTGGTATCGTCAACGAGACGTGTGACTCTCTGGCGTTCTGCGCCTGCAGCACCGTGGACCGGCTCTGTCTCAACTGCCACAGAATGGAGCAGAATGAATGTGAGTGTCCATGTGAATGCCCCCTGGAGGTCAATGAGTGTACCGGCAACCTCACCAGTGCTGAAAACAGGAACCCTAGTTGTGAGGTGCACCAGGAGCCAGTCAGTCTGAATGTGATTGATCCTAGTCTGCATGACACCATGCCCCAGTGCATCAACACTCGCTGTAGCCAGAGATACACCAGCAGTGATTGTTTCGGCGTGTTGGACTGTGAGTGGTGCATGGTGGACAGTGATGGTAAGACTCATCTGGACAAGCCGTACTGTGCCCTGCAGAAGGAATGTTTCGGGGGCATCGTCGGCGCCAAGAGTCCTTATGCGGATGGCCCTGGAGCCCTAGATGAGGAGGTGGCATCTCTAAATATGATCAAGAGCGCCCCTGTGGGTCCGGTCGCCGGCGGCATTATGGGATGCATCATGGTGTTAGTGCTGGCTGTGTACGCGTACAGACACCAGATCCACAGGCGTTCGCACCAGCACATGTCACCACTGGCAGCACAGGAAATGTCAGTGAGAATGTCCAACCTGGATAACGAAAGAGATGAGCGGGATGAAGACAGCCATGAGGACAGAGGAATCATCAGTAACACTCGATTCATCGCTGCCGTGATTGAGCGGCACACTCACACGCCTGAACGGAGACGGAGGTACTGGGGTCGATCGGGCACAGAGAGTGACCACGGCTACAGCACCATGAGTCCGCAGGAGGACAGCGAGAATCCACCTGGGAACAACGACCCGCTCTCAGCTGGTGTCGACGTCGGTAACCACGACGATGACCTGGACCTGGACACGCCTCCTCAGACGGCAGCGTTGCTCAGCCACAAGTTTCACCCCTACCggcacacgcatacacaccaCCACCCGCTGCACACGCACCACCTGCAGGCCGCGGTCACCGTGCACAGTGTGGACGCAGAGTGCTGATCTTCAGCGCGGcatttgcccccccccctgccAGGGATGGAACTTGgatagaactttttttttattattattaaagactatttttaaaaacatttgtgcTTGATTAGACAGCACACAGTAGGTACTGTCAGGATGGACATAGGGAGAGAGAAGCTGGACTCACAGTGTCACTGGGCCGCTGGGATCTCTGCCATGAATGAATGTTTAGCTTAATATGGTCTCATTGTGCCAACATCTCCATCTCaaccctttatatatatatttttttttttataacccaGTCCAAAATCTGGCAAGTGTACACAGTTTTACACACACTGAAAATTACCAGACCTGGGCCAGTAATAATAACCAaatggaatgtttttttttttttttgaaggaatTTGGCATTCAGGACTCTGTAAGAGCACACACAAATGCTGTTTGAGCCTATTCATTGAGGAGAAGACACATCTGGAACCTAAAATCCTTGAGAGAGGATATGGGTCTTTATTTCCATGTGGAAAACACTTTATGGGACCAGAGGATAATCAAATTAACATAGAAATCTAGATGCTGATTGGACCCCCCGGCTCCATCCCAGCCTCCCCACTAAGTCCACTTGTGGTGATGGACAGGAGGGGAACAAAGCTCTCTTTACATTTGTGAAAATGTCTCCGATGAAGAGTAAGaatactgtatttttacatAGGCCGGTACCTAATGTGGGATTCTATCATGAATTATATTGCAGCTGTACTCTCTGTTCTGCAGATAGACTCTCCACACCGGGGTTTCTTCTAAAGATAtttggacatttttcacaagtGTCTGTGAACTTCAAAGTACGAAAATAAATCCGTAATTCCCATAAATACAGGAAGAAACCCTTTTAAGAGGGGAAGATtatttttctactatttattaAAGCGGTAAATCTTCAGAACAGATGAGTAAGCAGCTGCAGCTAACACAAACAAGAAAGTAGTTGGGATAAGTGCTACGTACTGACCCACCCTCATTATTTTCTGGTTGTTTATTTGGAATTTAAAGAATATCCGACATATTTGCCTGTGGTGCATAATCACAAGCTCATTTGGATTTCATTTCCATTTCTTTCTTcaatttcttttataaattctGAGCTATCCTCTACCCCAGAGGATCCCATTTACTATATAGCGTGGTGAACAGAGTCTTCTTGCAGCATGAAACCTGTTTGGATGAGCAGGGACCTTAAATCAAAATCAGATCCGCtcctttgaaaaagaaaaagatattcAGGTATTTTTCGGTAAATAtcagtgtgtaaaaaaaaaaaaaaaaaaaaaaactaattaaaatgatGAGCCTTAAATCCCATCCTGTCTCAGAGTAGTTTGGAGGAAGTGGTCCTTGACATAGcacatttttctttctctattCAAAGTTCTGAATCACTGAGGACTTTGTGTTATTGTGAGGTAAGACTTGCCGTGCCGAACATCCTCATTCTGGACATGTCCTCCGTATCAGGAGGCAGAACTTCTATGCTCGCTTGCCTTTGTAAGCCTCCTGGGGATGAAGGAGAGAACAGTGAAAGTAACACCAGCAAAACATTCCTGGCTTTAGTCATTGCTGGGGATTTGGTGTGTCAGGATAGTTGGGGATCCCTATAGAGGTTCTGAGAGGTTCACAAAGACCCCCACATCCCAACTTATTTTGCCACCGAGGCCAGACTGATACTGTGTGTATGTTAAAGTTGTGTGCTGGATTTTGTGCAAAGCAAGTTGAATTTCCAGTGATGCCCAAGATGGAGTCTCCTTCTCATCAAAGAGTGAAAGCGGGAgagatgctgctgctgttgttgtacAGAGGTTACACCCATCTGTCGGCTCCTCTGTGGTTAACCACTCAAAATGTctctggtttgtgtgtgtgtgtgcgtgtgcgcgagAAGAGAGAATGATGATCCACCTGGAACATTTTCATTGAAtgcattattgtattttttttttcaagatagTATCAGAGAACTATAGGTGAAATTATTATGATTGAGAAATCCACTTATTTTTATTCTGATGAAGTCACTTGACCCGATCTGTGCTTTGTGAGTTTGATTGTTCAGCTGGTTAAAATTTGTGTCTGTGTAGCATCCATTTATTTCTGGGTGCAAAAAATGTCTATTGTTATTGAGAGATTCATTACGAAGTGTAAATACAGAATCACAAATAGCTATTAATGTCCTGTACACTCCATTTTTTTATGTTagtaaaacatgatttatgctTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128136 lncRNA upstream 71039 12865912 ~ 12866251 (+) True G94997
TU128119 lncRNA upstream 71449 12865015 ~ 12865841 (+) False ror1
TU127958 lncRNA upstream 494210 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 495429 12353673 ~ 12441861 (+) False lrp8
TU127967 lncRNA upstream 579271 12311823 ~ 12358019 (+) False lrp8
TU128141 lncRNA downstream 471 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 104023 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 112925 13107689 ~ 13112320 (+) True G95027
TU128185 lncRNA downstream 151541 13146305 ~ 13146795 (+) True G95040
TU128265 lncRNA downstream 340970 13335734 ~ 13342098 (+) False LOC120565776
XM_039812265.1 mRNA upstream 71448 12742805 ~ 12865842 (+) True ror1
XM_039812266.1 mRNA upstream 71448 12742805 ~ 12865842 (+) False ror1
XM_039812267.1 mRNA upstream 79665 12742805 ~ 12857625 (+) False ror1
XM_039811826.1 mRNA upstream 206321 12720091 ~ 12730969 (+) True pgm1
XM_039811307.1 mRNA upstream 219605 12703144 ~ 12717685 (+) True efcab7
XM_039810256.1 mRNA downstream 10804 13005568 ~ 13095406 (+) False raver2
XM_039811774.1 mRNA downstream 155086 13149850 ~ 13158641 (+) False ak4
XM_039811773.1 mRNA downstream 155087 13149851 ~ 13158641 (+) True ak4
XM_039811402.1 mRNA downstream 168941 13163705 ~ 13204369 (+) True dnajc6
XM_039811401.1 mRNA downstream 168941 13163705 ~ 13204369 (+) False dnajc6
TU127781 other upstream 1492757 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1688643 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1989044 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1996046 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2777483 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 10812 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 178261 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 384634 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1624594 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1815604 14810368 ~ 14916606 (+) False dennd1b

Expression Profile