RNA id: XM_039811984.1


Basic Information

Item Value
RNA id XM_039811984.1
length 5806
RNA type mRNA
GC content 0.52
exon number 33
gene id ptprsa
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16926619 ~ 17177885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCACGGCGGCTGCTGCTGAGGGAGGGAGCGACTCCTCTTGCCGTACCCAGACGCGTCCTGAGCAACCTGCGCTCTCGGGGTGGAtattattaaaaacataatttaaccCGGCAGAGGAACCTGTGAACCGCTCCTCACTGGACCTGCCGCAGGGACGCACACATTTAACACAAACCCGGGGattattgtttcttttaatCATGAAGATGTGAGGGTTTATAAgctgagaagaaagaaagaggaactCCGAGGCTGACAAAAAGGGGATGGTGCAGCACCCTCAGCACCACCTTTCAGCGCCCATCCTTCCAAGGTACAAGTGAGCGAGTAAcaagaagaagtagaagaagaagccGCTGGAGCAGCTGAAGATATGAAGCTAAAGAGGTTTTGAAAACAACCCAGTGAGTGCCAAGCCGTCCTGCGTGAAGATCCCAACCTTCCCTGCGCAGTCGGGGCCTCGGCTCTCCAGCCAGGTCAAAGACCAGTCCCACCCCACCctccctgcccccccccccccttccctacTAGAGCCAAGATGGCCACCAGCGGTGCCCCTCGCCTCTCCTTGCCACTCCTGCTGCCTGCCACCACTCTGCTGCTATCACTGCTGCTCACCGGCTCCCACGCCTTATCATCACCAAGGTTCACTAAAGTTCCCGTCGACCAGATTGGCGTCTCAGGGGGTGTGGTCTCTTTTGTGTGCCAGGCAACTGGCGACCCAAAGCCAAGGGTTAGCTGGAACAAGAAAGGCAAGAAGGTCAACTCCCAGCGTATAGAGACCATTGAGTTTGACGAGGGTGCCGGCGCCGTACTCCGAATCCAGCCTCTTCGAGCGCCACGTGACGAGAACATCTACGAATGTGTTGCTGAGAACAGCGAGGCCGAGATTACTGTAAATGCCAAGCTGTCCATCATCCGAGaGGATCTACTCCCACCAGGCTTCCCTAACATTGACATGGGCCCTCAACTCAAAGTGGTGGAGCGCACTCGAACAGCCACTATGCTCTGTGCCGCCAGTGGCAACCCTGACCCAGAAATCACCTGGTACAAAGACTTCCTGCCCATTGACCCCAGTGCAAGTAATGGGCGAATCAAACAGCTACGCTCAGGTGCCTTGCAGATCGAGAACAGCGAGGAGACAGACCAGGGGAAGTATGAGTGCGTGGCGTCAAATGTGGAAGGCGTACGCTACTCGTCCCCTGCTAACCTTTATGTGCGAGAGCTTCGAGAAGTCCGACGGGTGCCTCCTCGCTTCTCCATTCCACCAACGAGTCAGGAAATTATGCCCGGTGGCAGTGTGAACATAACGTGTGTGGCGGTGGGGTCGCCCATGCCTTACGTCAAGTGGATGCTGAACTCAGAGGATTTGACACCGGAGGATGAGATGCCAGTGGGCAGGAATGTTCTTGAACTGAGCAGCGTCCGTGAGTCAGCAAACTACACCTGCGTGGCCATGAGCAGCCTTGGCATCATTGAAGCTGTGGCGCAGATCACTGTCAAATCTCTCCCCAAGCCTCCAGGTACTCCTGTGGTTACTGAAACTACTGCAACAAGTGTGACCATCACCTGGGACTCGGGAAACCCAGACCCAGTGACTTACTATATCATCCAGTATAGGGCCAAGTCCCCAGACAGCAAGTATGAGACAGTGGATGACATTACCACTACACGTTACAGCATTGGTGGCCTCTACCCCAACACAGAGTATGAAATCCGTGTCTCAGCCGTCAACACAATTGGCCAGGGTCCTCCCAGTGAGCCAGTAGAAACGCGGACTGGTGAACAGGCCCCTGCCAGTCCACCACGAAACATCCAGGCCCAGATCATATCCCAAAACACTATGATGGTGCGCTGGGAAGAGCCCGAGGAGCCCAATGGTCAGATCAAGGGATACCGCGTTTATTACACCATGGATGACAACCAACCCATGAGCCTCTGGCAAATCCATAATGTCCAGGACAGCATCATCACCACTATCCAGAGCCTGGTTCCTCAAGAGACATACACAATCAAAGTCCTAGCATTCACCTCTGTAGGAGACGGACCCTTCTCAGAGCCCATCCATGTCAAAGTACTGCAAGGAGTTCCAGGTCAACCATCCAAATTCCAGGTTGGTGCTGTGTCTGATACCAGCATTGAACTGACCTGGGAAGCTGCCTATGAGAAAGAAGGAATTATAAATTATGAACTTCGCTACATGGAAGGCAGTTTTGGCACCCAGatgaagaaaacatttggACCCACATCTTCATATGTTGTGGAAAATCTCCGCCCAAACACAGAGTACCACCTCTCCCTGGCAGCCATCTCGAACAAAGGCATTGGAGCCTTCACCAATGACATATCACAGAAGACCTTGCAAGCCAATGTTCCAAAGAATTTCACTGTCAAGTGGGCCACTAAGACCACAGTGGTCATTGCATGGAAGTTTTCTGAAAGCAGGTCTCCATACAAATGCACGATTGAGTACAACCGTCAGAAGATGGATGTGGACGCCAGGCAGATGAGGGTGCTCGTCACTGGACTAAAGCACAACACCACCTACGAGTTCAGGGTGACCTGCCAAGAAAGCATGGACGGTGGGCCAAGACATCGCGTGGTTGCCAGGACCGCGCCACTCATCCTGGTCAAGAAACCCAAGCTGGACATTTACGCTGAGCCTGACAACATGCCCACCATGTCCTTCCCACCGGTCGATACCAAGGATGTAAAGACCTTCTATGTGGTTGTGGTGCCACTTAAGAGGACCTCAGGAACTGTCAAAAACCTGAAGAACCCTGATGAGATGGACATGGAAGAGCTGTTACGGGAGGTGACCCCAAAGCGTCGCTCACGCCGTCAGCTGGCTCAGCTGGACCAGAGGAAGCCCTACATCACAGCCTGCTTCAAGCAGCTGCCCTCAAGCTTCATGGTGGGATCTGACTACCGCCACAGCAGCTGTGAGAACAAGCCTCTTGAACCTGGCCAGGAGTATGTCTTCTTTCTGCTGGCTGAACTCAATGCCACCGCCGGGAAAATGTTTGCTACCAGCCCTTACACCGACACAGTGATCACTCCCAAGCTGGTGGTGGAGCCATTAGAGACTGGTGACGGACTCATATGGGTGGTGGGCCCGGTCCTCGCTGTGGTCTTTATCATCTGTATCGTCATAGCCATTCTTCTGTATAAAAACAAACCTGACAGCCGCAAAAGAAAAGAGTCAGAGCCGCGCACAAAATGTCTACTGAACAACGCAGACATTACACCCCACCACCCTACAGACCCTGTGGAGATGAGACGCATCAACTTCCAAACTCCAGATTCTGGTCTAAGCAGTCCTCAGAGTGAAGCCGATTTTGACTATGAAAGTATGATGAATCATCCTCCCATCCCTATCTCAGAGCTGGCTGAACACACAGAGCTTCTCAAGGCCAACGACAACCTCAAGCTCTCCCAGGAATATGAGTCTATTGATCCAGGCCAGCAGTTCACCTGGGAACATTCCAACCTGGAGGTGAACAAGCCCAAAAATCGTTATGCCAACGTCATTGCCTACGATCACTCTCGCGTCATCCTGGCTCCCATCGAGGGTATCACTGGTAGCGACTATATCAACGCCAACTACATTGATGGCTACAGGAAGCAGAATGCCTACATCGCCACCCAGGGTCCATTACCAGAGACGTTCGGGGACTTCTGGAGGATGGTGTGGGAACAGAGAGCAGCCACTGTGGTCATGATGACCAGGCTGGAGGAGAAGTCACGGATTAAGTGTGACCAGTACTGGCCCAGTCGTGGCACAGAGACTTATGGTATGACCCAAGTGACCCTCCTGGACACCATAGAATTGGCCACTTTCTGTGTCCGCACTTTCTCCTTGCACAAGAATGGCTCTAGTGAGAAGCGGGAGGTTCGTCAGTTTCAGTTCACGGCGTGGCCTGACCACGGAGTACCAGAATACCCGACCCCCTTCCTGGCCTTCCTCCGTAGGGTAAAGACCTGCAACCCGCCTGACGCTGGACCCATCATCGCTCACTGCAGTGCTGGTGTCGGCCGAACAGGTTGCTTCATCGTCATCGACGCCATGCTTGAGCGTATTAAGCACGAGAAGACGGTGGACATTTACGGCCATGTGACGCTGATGCGCTCGCAGCGGAACTACATGGTGCAGACGGAGGACCAGTACAGCTTCATTCACGATGCACTGCTAGAGGCGGTGGCCTGCGGCAACACTGAAGTGGCTGCCCGAAGCCTCTATTCCTACATACAGAAGCTGGCCCAGGTGGAGAGTGGCGAGCATGTCACTGGCATGGAGCTAGAGTTCAAGCGCTTGGCCAACTCCAAAGCCCACACGTCGCGCTTCATCAGTGCCAACCTTCCCTGCAACAAGTTCAAGAATCGGCTGGTCAACATCATGCCCTACGAGACCACGCGCGTCTGCCTGCAGCCAATAAGAGGCCTGGAGGGATCTGACTACATCAATTCCAGCTTCATTGATGGATACAGGCAACAGAAGGCCTATATCGCCACGCAGGGCCCTCTGGCAGAGACTACAGAAGACTTCTGGAGAATGCTCTGGGAGAACAACTCTACTATTGTAGTCATGTTGACCAAACTGAGAGAGATGGGACGGGAAAAGTGTCACCAGTACTGGCCGGCGGAGCGCTCTGCCAGGTACCAGTACTTTGTGGTTGATCCCATGGCGGAGTACAACATGCCCCAGTACATCCTCCGAGAGTTCAAGGTCACAGATGCCAGGGATGGTCAGTCCAGGACAGTAAGGCAGTTCCAGTTTACTGATTGGCCGGAGCAAGGCGTGCCCAAATCCGGGGAGGGATTTATTGATTTCATCGGCCAGGTGCATAAAACCAAGGAGCAGTTTGGACAGGACGGACCAATCTCTGTCCACTGCAGTGCCGGTGTGGGCAGGACCGGAGTCTTCATCACCCTTAGCATCGTCCTGGAGCGAATGCGTTATGAAGGCGTGGTTGATATCTTCCAAACAGTGAAGATGCTCCGGACCCAGAGGCCAGCCATGGTCCAGACTGAGGATGAATACCAATTCTGCTATCATGCAGCTCTGGAGTACTTAGGAAGCTTTGATCACTATGCAACGTAAAAAAGCCATCTCTTACCCCCAGAGTCCTGTcgttccccccctccccccccccaacagtCTCCGGAGCCATAGAaactttaaaattttaaaaacgaAGACAGCAGACGACAATAACACCATCACTAATTCAGACACACCAAACAGGATCCTACTGTAGATTTTAAAACAACGCCCAACCAACTTGTTGAGAAAAATTCCAATTCGACCAAGAGACCCTTCGTGAGGAAACGAGGAAAATTGCCCATcatcaaagaaaaagaaaatcctcatCGGCAGAGGAACCAGACGCTGTGGCTCAGGCTGTGGGGCGGGAATCGATCAAAGTGTCAGACTGCTTACCTTACCTCAAGTGTTTCAATGTGGAGGACATTGTAAACATTCGTGGACATTTCTCTTCTCAAAAATATCTTTGTGATACAACGGTAACAAGCAACAGTTAATGAAGGAGaaggcaacaacaaaaatcaatgAGAGGCAGATGGATGTAGCCGAGACGGGGTGacttccttttgtttttgttttatatgccTGGGTGTAAacgggggggggtggggggtggttcAAGTATTTCTATCAATAAATTTGGTGAGTGATATCCAGAGAAATGACCAAACTGTGGTTGCCTGTGTGAACACACATGGTTTTCCCCAACCTCTGgtaaatccaaaaaaaaaaagtggaaacatAACTAGCACGAGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129594 lncRNA upstream 48539 16877876 ~ 16878081 (+) True G96088
TU129592 lncRNA upstream 154450 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 250043 16676207 ~ 16676577 (+) True G96076
TU129581 lncRNA upstream 333438 16592876 ~ 16593182 (+) True G96075
TU129574 lncRNA upstream 422809 16503145 ~ 16503811 (+) True G96070
TU129700 lncRNA downstream 79508 17257393 ~ 17261030 (+) True G96160
TU129761 lncRNA downstream 245180 17423065 ~ 17423278 (+) True G96202
TU129778 lncRNA downstream 442913 17620798 ~ 17636711 (+) True LOC120564955
XR_005640171.1 lncRNA downstream 445099 17622984 ~ 17636720 (+) False LOC120564955
XR_005640170.1 lncRNA downstream 445099 17622984 ~ 17636720 (+) False LOC120564955
XM_039811532.1 mRNA upstream 466820 16458187 ~ 16459800 (+) True LOC120565628
XM_039811382.1 mRNA upstream 550171 16320494 ~ 16376449 (+) True kdm4b
XM_039811383.1 mRNA upstream 550171 16320494 ~ 16376449 (+) False kdm4b
XM_039812009.1 mRNA upstream 609122 16301923 ~ 16317498 (+) True uhrf1
XM_039811580.1 mRNA upstream 625620 16289884 ~ 16301000 (+) True kcnn1b
XM_039812487.1 mRNA downstream 28885 17206770 ~ 17217790 (+) True tbxa2r
XM_039811669.1 mRNA downstream 58489 17236374 ~ 17255548 (+) False si:zfos-943e10.1
XM_039811668.1 mRNA downstream 58490 17236375 ~ 17255548 (+) False si:zfos-943e10.1
XM_039811670.1 mRNA downstream 64882 17242767 ~ 17255548 (+) False si:zfos-943e10.1
XM_039811671.1 mRNA downstream 64882 17242767 ~ 17255548 (+) False si:zfos-943e10.1
XR_005640269.1 other upstream 585572 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2010014 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2012587 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2305207 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3543876 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 677752 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 688663 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 690781 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 693825 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 694393 17872278 ~ 17872411 (+) True LOC120566214