RNA id: XM_039811997.1


Basic Information

Item Value
RNA id XM_039811997.1
length 3433
RNA type mRNA
GC content 0.46
exon number 15
gene id cyldl
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6627642 ~ 6641120 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACCATTACATAGCAAACGACCTGCTGCTGGATGTCAACTGATTtgaaaacaacaaacttcgtCACTTTAAAATATTCCTAACATTTAGCTAATGACCCGTTTTGAAAAAGTACGTTATTGGCAGCAAGCCAAACATTTCTAAAGTCATTTCTATTGGAAGAGCATGAAACGCCAGTGACGCCGctgtgaaatgaaatgaaaggggaAGTAAAACTTAACGCAGCTGGTTTGGACATAAGCCCAGAAGAGCGAAGATTAAACAGAAAGCAAACTCTAAACTTGCTACACAACTGAAGtattcTGCTCAGCAACATGACGTCAACAAAAAAACTGTACTTCATCATAACAAGAAAACCTGAATTCCCGGGACACATCAGTGCTGGCCGCATATGCTACATCAGTGAGTACAAGCACAGATCATCACTCAGAACAAGCTCTCGTTCGCCCATAAAGTTGCCCGTCTTCGTCATGGGCTCATGTTCAGTAATAGATTATGACCTAGAGGTGAGTAGCATGGAGGAGCTGAGTGCAGAGGAAGCAGAGTTGTTGCTAGCCCTGTCTGAGGATGCGGAGAGGCTGAAGTGGTTCAACGAGAGAGATGCTCTTCGAGCAGCAAAAGGACTCGCTGTGGGTACTGAAGTGACTGtggaagaaggaggagggaagCTTCGAGGCATCCTTCGCTACATTGGAAGACTTACAGAGCCAACATATTCTGCTCCCTTATCAGGAACGTTCTTCGGCATTGAACTGCAGGGAGAAGACAAAAGGAAGGTGAAGACGGATGGGTCCTACCAAAATAAAACCTTCTCCTGTAAAAAAGATTGTGACATTTTTGTCCCATTCTCCAGAGTCAGGCCTTTGGTGCCCAGCTCCTTGTCACCCTCCATGCCTGCGCACTCACAAACCGAAGAGCTCAATCCTGGAGATAGAGTCACTTACTTTGTCAATGATACATGTCGGCATGGAATGGTTGTGGATGTGTTGCTAAATGTTGTCCGGATCTCTACGGACAAAGATGAGAATGGAAAGAGAGGGGGCGAAGTTGACATTCCGCTGGAGTCGGTTTTTAAGGGGGAGGTGCCTGCAGAGCCAGAGAGCATGGATGTTGATACACCCCCGGTGGAACCAAACACTGATGATCTGTACTTGGATCTGAGTGTGAACTCTTTGGTGGAGGTGACCTTAGCCAAAGGCAGTTCATATGGAATCATCCGCTGGATCGGCAGTCTGCCTACTCGGCAGGAAACCATGGCTGGACTTGAGCTGGAGGAAGACAGTGGAGTGAGTGATGGTACCTTTAAAAATGAGCGTTTCTTCAATTGTCCCCCCAAAAGGGCTCTGTTTGTGAAGCTTAGTTCCTGCCGTCCTGACCCACGATTTCAGAGCacatcagccaatcacagcgaaAGGATGCCAAAACAGGAAGACGCAGagagagaggtagagcaCAGTGCGGGGAAGCTGGAGACTGTTCCTCCAATCAGCACCGAGCAGGTTAACCAGATTTTGCTTGGACGAATGAAGGGGATCCAAGGCCACTGCAACTCCTGCTACATGGATGCTGCCCTCTTCAGCTTGTTTTCCTGCTCCTCTGTGTTGGACTCCATGCTGTTTAAATCAACAGAACCTCAAGATGCCCCGATTCAGAACACATTGCTCCATGACATTGTTAATCCCCTCCGCAGTAAGGGCTTTGTGGAAGGGCGGCACATCATGAAGCTCCGGAAACAGCTGCAGAACCACGGCTACAGTCACTCCTTCACCACGGATGAGAAGGATCCAGAGGAGTTCCTTACTGTCATCATGCACCACATCCTCGCACTGGATCCTCTACTCAAACTCTCAGCGGCCGGTAAAGTGCAGGAGAGTTACTGCTATCAGATCTTCCTGGACCAGAACCACAGCCTGGTGCTGCCGACAGTCCAGCAGCTGCTGGAGCATTCCTTCCACACGGCAGGACTCAAGCTGGCAGAGGTGCCATCCTGCCTCATCCTCCAGATGCCTCGCTTTGGGAAGAAATTCAAGATGTTTGATAAGATCATTCCCTCTCTGGAGCTGGAcatcactgacctcctctctgaaggtcctCAGCAGTGCATGCTGTGTGGAAACTTGGCCCAGATAGAGTGCCCCGACTGTTTCACAGATCCTCTTTTCAGCCGGACGGGATTCAAAATCTTTTGCAAGACGTGTTCATCTCAGGTGCACTCTCATCCTCAGCGCCGGTCCCATAGGCCAGCTGCTCTGGACATCCCCGAGGGTTACTCGGGCCGCGGCACGCCTCACTCTCTGATCCGAGACAAGCTGGAGCTGTTCGCTGTGCTCTGCATCGAGACCAGCCACTACGTGTCCTTCATCAAACACGGTCGCAGCAGCCAAGACTGGATCTTCTTCGACAGCATGGCCGACAGACAAGggGAGAGAGACGGCTTCAACATCCCGGAGGTTCGCGCCTGCCCCGAGGTCGGCACGTACCTGGAAATGTCTCCGGCGGAGCTGGCCAATCAGGTGCCTCGAGACATGAAAGGCGTGGCCAAACGTCTCTTTTGTGACGCCTACATGTACCTGTACCAGAGCACAAACATGTGTCTCTATCGCTGAGCGGACGCAGCCCCGCAGCTTACTCTATGCACAAAATGTAAATTGGggataaaaaatatgttttgccTTTGCTGTCCATGTAATTTCCTTTTGTGGGTTAGTTTGCTATTCTTTTATGAATGTGTGGAAGTACATACGTGATGCttaaaaaatgtgtatatatagtttTTCTGCCCTGGTGCTGGGAAAGTATTATCAGGCTTAAATAATTTATAACAATATTGTTTTACTTTAAGAAAAAGTACAAACTGAGGTTGCGTGCTCAACCATTTTGCACTATTAAGACAAGAAATTGACAATCACTTACGTGTTAGAAGGACAAAAGTTGCACTGTGATATATGTAGTTTACTGCTTCCTCTTGGTGTTTGATAATTATCTTTAAAAGTTATACTTACAATTTTTATACTGAGAGTAAATGAGTGTTGCagataaaataataatgatttCAGAGTGGCCTGTTGTAATGAATGAAACTTAACAGTAATATTATAAAAACAATGTTATTAATTTCTTCAGTAAGCATTGtaccttttaatgttttttttcttactaaTAAGGGTTCAGGCTGGACCGGTTGCTTTATATATTTCTGTAGAATTTGTTCCTATTATTTTTAAGGTTGAATATGAAAATGCTCTTTTGTATCGCTCAGCATCTTAACTGACGTGATGTTTGGGATAAAGTTGGGAAAACTGCACTCAAATGGCTACGTAGAGGTCAAGGCTAAACTTTTCCATTTATACTGTACGTTTATTGCAACTGGTTCTGATATACAAGACAATACAATTAGTTATTGTAATAAAAACGTATCCCCAGTCCTGCACA

Function

GO: NA

KEGG:

id description
K08601 CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLD

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126449 lncRNA upstream 37989 6589203 ~ 6589653 (+) True G93713
TU126433 lncRNA upstream 228645 6390156 ~ 6398997 (+) True G93700
TU126357 lncRNA upstream 385484 6241195 ~ 6242158 (+) True G93644
TU126350 lncRNA upstream 411907 6215068 ~ 6215735 (+) True G93640
TU126316 lncRNA upstream 576122 6035369 ~ 6051520 (+) False G93613
TU126505 lncRNA downstream 195471 6836591 ~ 6836818 (+) True G93758
TU126542 lncRNA downstream 235031 6876151 ~ 6876493 (+) True G93790
TU126543 lncRNA downstream 238683 6879803 ~ 6880081 (+) True G93791
TU126583 lncRNA downstream 333187 6974307 ~ 6975368 (+) True G93820
TU126587 lncRNA downstream 334524 6975644 ~ 6977546 (+) True G93823
XM_039812355.1 mRNA upstream 246044 6354892 ~ 6381598 (+) True rhpn1
XM_039811775.1 mRNA upstream 282561 6335751 ~ 6345081 (+) True LOC120565762
XM_039811499.1 mRNA upstream 337523 6262220 ~ 6290119 (+) True tut4
XM_039811753.1 mRNA upstream 556395 6067683 ~ 6071247 (+) True LOC120565748
XM_039811550.1 mRNA upstream 598449 6002811 ~ 6029193 (+) True LOC120565642
XM_039810252.1 mRNA downstream 30951 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA downstream 30951 6672071 ~ 6723277 (+) False ghrhrb
XM_039811272.1 mRNA downstream 324427 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039811274.1 mRNA downstream 366050 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811275.1 mRNA downstream 467029 7108149 ~ 7127272 (+) True igfbp3
TU126420 other upstream 259288 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 413625 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 587523 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 1914457 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 2330232 4284902 ~ 4297410 (+) True LOC120565391
TU126750 other downstream 708690 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1257552 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1596250 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1596250 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2506042 9147162 ~ 9159695 (+) True G94199

Expression Profile