RNA id: XM_039812020.1


Basic Information

Item Value
RNA id XM_039812020.1
length 2364
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC120565906
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22118994 ~ 22124092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACACaattcccacaatgcaatgccaTTTTCACCTTAAACTGAAATACATTAGACATCTGAGAGTGAATATCTTTAAACCCATATATCCATCTGATATCTCCGTGAATTGTTGTACCTGTTTGGCGTTTGTGTGCTGATATTCAGGGACTGGCTCGctgttgtatATCTCCAACATTCCAGCCTGTGGCTGTGGGATCAGTGTTTCAGGTTAAGATGGATCCAGATTATGAACATCGCCTCCTCCGCCAAATCAACACTGAAAATGACAACTTGAGCCCTGTTAAACTGACACAGAGTCTGCGCGGTCGGACACCCACCAACTCCCCGTTATCTTCCCCCAGTAAGCTTGGAGACAGATTTATTCCAACCAGAGCGGGGGGAAACTGGAGTATCAACTTTCACAGGATCAATGAAAATGAGAAGTCACCAAGTcataacagaaaaacaaaggATGCCTCTTCTGATAACATTAAagACGGGCTGGCCTACTCTGCTCTGCTGAAGAATGAGCTGCTGGGAGCAGGAATAGAAAAGATCCAGGACCCTCAGACGGAGGACAGGCGTTTACAGCCATCAACCCCAGAAAAGAGATGTCTCTTCACTTATTCACTTAATATCAAGAGATCATCACCAGACGATGGCACCAACATCTCCCCCTACTCTCTATCACCTGTCAGCAACAAAAGTCAAAAATTGCTGCGTTCACCACGAAAGCCAACTCGCAAGATCTCAAAGATCCCTTTTAAAGTCCTGGATGCTCCAGAGCTGCAGGATGACTTTTACCTCAACTTGGTGGACTGGTCGTCTCTCAACGTGCTCAGTGTCGGGCTGGGTACATGTGTTTACCTGTGGAGTGCCTGTACCAGCCAGGTAACAAGGTTGTGTGATTTATCGGTGGAGGGAGACTCGGTCACATCAGTTGGGTGGTCTGAAAGGGGTAACCTGGTGGCAGTGGGGACTCACAAAGGCTATGTTCAGATCTGGGACGCTGGTGCTGGGAAGAAACTCTTTGCCCTGGAAGGACACACAGCTAGAGTTGGAGCATTAGCATGGAATGCAGACCAGTTGTCTTCGGGAAGCCGTGATCGTTTGATTCTCCAAAGAGATGTGCGGACCCCTCCACTCCAGTCAGAGAGACGGCTGCAgggacacagacaggaagtgtgtggcTTAAAGTGGAGCACTGACCATCAGCTGCTTGCCTCTGGTGGCAACGACAACAAGCTGCTGGTTTGGAACCACTCCTCGCTGAGCCCAGTGCAAACATATATGGATCACTTGGCTGCAGTGAAAGCCATTGCCTGGTCCCCCCACCAGCACGGCCTGCTGGCCTCTGGGGGCGGCACTGCCGACCGCTGCATTCGATTTTGGAACACCCTGACCTCACAGCCGCTGCAGTGTATGGACACCGGCTCTCAGGTCTGCAACCTGGCCTGGTCCAAACATGCTAATGAACTGGTGAGTACTCATGGCTACTCTCAGAACCAGATCTTGGTGTGGAAATATCCAGCTCTCACTCAGGTTGCCAAACTCACAGGACACTCCTACAGAGTGCTCTAcctggCCATGTCCCCGGATGGTGAGGCGATTGTGACGGGAGCTGGAGATGAGACTCTTCGCTTCTGGAACGTATTCAGTAAAACAAGATCAACTAAGGAATCTGTATCAGTTTTAAATCTCTTCACTAGGATACGATAACTTTAAGCAAATATTAAAACTGTAAAACTCTAGTTTGAGTGGCTCTTGGTATGACCACTGGATAGCTCATCAACATGGTGCTAAGGACATACAGTACAATCGCAGCAAGAGCTTTTTTCATGCTAACAATTGTTTGCAAAATTCTTTTTGACTTTTGTGCTCTCATTATGAATGTTGTCCTTTTTTATGTATAAGTGGGTTGATTTCAATTTGTTATGTGTTCACAACAATAAATCACAGGCCTTACTTAAAATGCCTTGCTTACCAATACTGAAATGTAGAGGGagcatttttagtttttgtttaacTCAGGTCTTATTTATTTAACACTGCAGTGAAAGCCATTGCAGTGAAGGCTGTAATGGCTTCAATGGAGAAAAATGCCATTACATAttataacaaaaacataaaaaaataaacataatcaCCTACTAAGGCCTTTACAGTATATTCACCATGTTTACTGTGATCCTTAGAGTACTAAGGTTAAAAGTGGTTGGCTAAAATAATGTAGTTTTGCTCCTGTGGACAGAAAGTCTAATGCTGTGCATCAAGACATATACTACATAGTTGATTCTTTGTCGTAAAGGAAGAAATAAAAGCTCATGGAACTGAAGAACCGGTGTATATTTCCTATTTGCCATTAAAAATTTCCGTCTCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131249 lncRNA upstream 25620 22091389 ~ 22093374 (+) True G97263
TU131159 lncRNA upstream 83320 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 111641 22005775 ~ 22007353 (+) True LOC120565815
TU131148 lncRNA upstream 121251 21997413 ~ 21997743 (+) True G97181
TU131135 lncRNA upstream 174433 21944082 ~ 21944561 (+) False G97170
TU131286 lncRNA downstream 32019 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 33965 22158057 ~ 22174393 (+) True G97297
TU131330 lncRNA downstream 189556 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 198400 22322492 ~ 22322855 (+) True G97338
TU131429 lncRNA downstream 447662 22571754 ~ 22576548 (+) False LOC120566218
XM_039812013.1 mRNA upstream 6071 22103969 ~ 22112923 (+) True rx1
XM_039810176.1 mRNA upstream 28144 22079192 ~ 22090850 (+) True matk
XM_039810175.1 mRNA upstream 28144 22079192 ~ 22090850 (+) False matk
XM_039810177.1 mRNA upstream 28144 22079192 ~ 22090850 (+) False matk
XM_039810683.1 mRNA upstream 39975 22053357 ~ 22079019 (+) False zfr2
XM_039812017.1 mRNA downstream 432 22124524 ~ 22134337 (+) True haus5
XM_039812015.1 mRNA downstream 10589 22134681 ~ 22154333 (+) True sin3b
XM_039812016.1 mRNA downstream 10589 22134681 ~ 22154333 (+) False sin3b
XM_039812025.1 mRNA downstream 105313 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA downstream 105314 22229406 ~ 22259111 (+) True acbd6
TU131036 other upstream 336994 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2587317 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3333358 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4246583 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4247147 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 159554 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 361419 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 368865 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 447967 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 448377 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile