RNA id: XM_039812025.1


Basic Information

Item Value
RNA id XM_039812025.1
length 1822
RNA type mRNA
GC content 0.46
exon number 7
gene id acbd6
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22229405 ~ 22259111 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACTTTTAGTTGACAGTGCCTGAGACGGACCAACGGTAGAAACAAATCCGACTGTCACCGATTCTTAACGATAACGGATTAAAAAACGAAATCGGCGCTGAAATACTCATCAAATATATTTAAGGTAGCTACTCTCTGTTCGTCTTTAACGTTTTTAATACGGATCTACGGCGCACGTCGTCTCTGACGGTACGCTACCGTtataaacaataataacaatggCTTCTGGGTCGCCGTCTTCCTCTCCGGACACTGCGACGGGCTCAGGTACAGACCCAGCCCGGCCCGACACAGGGGAGCCTCTCGGTGGAGCAGGCTCGGACTCGGACTCGGACATGGGTTTGGGTAAATTTGACTGCAGCGCCATTGACACGGGGGACCGGCTGGATGGAGAAGGGCTGGAGCAGGAGTTTGAGTCTGCAGCCGACCGCGTACGAGATCTGGTTCAGACGGCCAGCAGGGACCAGCTGCTGTACCTGTATGCACGATACAAACAGgcCAAAGTGGGAAAGTGCAATACACAAAAGCCTGGCTTCTTTGACTTTGAAGGACAGAGAAAATGGCAAGCCTGGAAGCAGCTTGGAGACATGGAGGCAGATCAGGCAATGCAGGAGTACATATCTTGTGTCAATGTGTTAGACCCTGAAGGCTGCACAAAGGAAAGACGACAAGCAGAAAGAAGAACGGGCTTCGGAGGAGCAACAGTCAGCTCGCTATACCAGGAGGAGATGATCAGGGAAGAGGATAAGAACATCTTTGACTACTGCAGAGAAAATAACATCGACCACATCAGCAAGGCCATCATCTCGCAGAAAGTGGATGTCAATGCTAAAGACGAAGAGGATAATGAAGGACAGACAGCGCTACATTATGCATCAGCGTGCGAGTTTGCTGACATCGTGGAGCTCCTGCTGAACGCTGGAGCCGACCCGTCCATCAAAGACATGGAGGGCTCTCTCCCTGAGGAGGTCACTGAATCCAGTGccatctcctctctcctgcGTCACTACACAGCTCCAAAAGGCTAGCTCACCCACCTGCCACCACCCTGGTCCTCGCCCCCGTCCTTGTCTCATCCCTGCTTCACTCATTCAACCATCCTCCTCATCATCCCTCCTTCATCCCTGAAGAGACTCTGTTCTTCCCCAGCAGTTAGTAGACCAGGATTACAACagttttatttgatttgattttcaaATACTTGAGGTGAGTTTGGTTATATTGGCTTAGCTCTGTGGAACTACAGGGTTTACACATTAGCCCTTCCATGTGATGAGTGTCAAGTGAAACAAACCACATGTAATTTCAATCATCCAAATAATGTATATTGACTTTATATGCCCAGTAGGGTTGGGTGATATGACTTATACTGCGAGTACTGCTGGAGATTTTGCTATACTGAGGTAGTTACACCTTAAATATCTTTTGCTGTATTCGACCAATGCAGACAATGTTGCAAATCAATGAGCAGGACTGCTTATTGACAATATTGGAATAACAGGGTTTGTGCATCAATGTGGTGAAGTATCTGTATTTGTCAGGTATTTAAGTCACTGGACGAACCAAAAAAAGACATTCCCATCCACTTATTTGATCTATAAACAGTAAAATATTTCAGAAAGTTCATACCGCAATATGATATTAAATACTGTAATAAAAGATTTGATACATATCACCCACTCCTACTGCCCAGGTCTGACTATCAGCCAGGCCTTTTAGTCTGAGTCAGCCCTCTCTGACCATTTGTTCATGATTCAGTTGTTACGTTCAAGGAATGCTTTGATCGTTTGTCATTTATCACATTAAAGTCTTCAACAAATA

Function

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131289 lncRNA upstream 55012 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 71447 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 136031 22091389 ~ 22093374 (+) True G97263
TU131159 lncRNA upstream 193731 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 222052 22005775 ~ 22007353 (+) True LOC120565815
TU131330 lncRNA downstream 54537 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 63381 22322492 ~ 22322855 (+) True G97338
TU131429 lncRNA downstream 312643 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA downstream 312684 22571795 ~ 22576548 (+) True LOC120566218
TU131439 lncRNA downstream 335385 22594496 ~ 22595277 (+) False G97410
XM_039812015.1 mRNA upstream 75072 22134681 ~ 22154333 (+) True sin3b
XM_039812016.1 mRNA upstream 75072 22134681 ~ 22154333 (+) False sin3b
XM_039812017.1 mRNA upstream 95068 22124524 ~ 22134337 (+) True haus5
XM_039812020.1 mRNA upstream 105313 22118994 ~ 22124092 (+) False LOC120565906
XM_039810182.1 mRNA downstream 101420 22360531 ~ 22453997 (+) True LOC120564914
XM_039810184.1 mRNA downstream 199350 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039811777.1 mRNA downstream 226400 22485511 ~ 22491235 (+) True LOC120565764
XM_039812090.1 mRNA downstream 233846 22492957 ~ 22501015 (+) True soat1
XM_039812089.1 mRNA downstream 233846 22492957 ~ 22501015 (+) False soat1
TU131036 other upstream 447405 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2697728 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3443769 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4356994 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4357558 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 24535 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 226400 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 233846 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 312948 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 313358 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile