RNA id: XM_039812028.1


Basic Information

Item Value
RNA id XM_039812028.1
length 1550
RNA type mRNA
GC content 0.55
exon number 17
gene id ssbp3b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25069211 ~ 25083922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCAGGCTCGGTTGAGTCGTCGGGTTGAGGAGGAGTGCGGTTGGAGTGCTAGAGGGTCGCGGCCGCGATGATCTGACAGATGAAATAGcggaaaaaaaggaagagaaggCGGTCGTCCACCCACACAAAACATGTTCCCCAAAGGCAAAAGCACCCCGGTGCCGTCGGACGGCCAAGCACGAGAAAAGTTGGCTCTGTACGTCTATGAGTATTTGTTGCATATAGGAGCACAGAAGTCCGCACAGACCTTTTTATCAGAGATacgatgggagaaaaacataacACTCGGAGAACCCCCTGGATTCCTACATTCCTGGTGGTGTGTATTCTGGGACTTGTATTGTGCTGcaccagagaggagagagacatgtGACCACTCCAGTGAAGCAAAAGCCTTCCATGATTACagtGCAGCAGCAGCCCCCAGTCCTGTGATGGGAGGGATGCCCCCTGGTGAGGGCATGCCAGGAGGACCCATGCCACCCGGCTTTTTTCAGtCCTTCATGTCGCCTCGCTTCGCTGGAGGCCCAAGAGGTCCCCCCATCAGGATGGCCAACCAGCCCCCAGGCGGAGGACCGGGTCCTCATCCCATGCTGCCCAACATGGACCCAACACGGCCACAAGGCCATCCTAACTTGGGGCCAATGCAGAGAATGAGCGGCCCTCGAGGCATGGGACCTATGGGGCCCGGCCCTCAGAACTTCGGTGGCGGGATGAGGCCTCCACACAACGCCATGGGTCCTGGTATGCCAGGAGTAAACATGGGTCCAGGGACTGGTCGGCCCTGGCCCAATCCCAACAATGCCAACTCTATGCCTTACTCATCACCCTCTCCTGGTGCATACGGGGGTGCTTCTGGAGGTGGGGGCCCCCCAGGAACTCCCATCATGCCCAGCCCTGCAGACTCAAACAACTCTGGTGACAATTTGTACACCATGATAAACACTGGATCCGGCAACCGAAACAATTTCCCTATGGGCCCCGGCTCTGACGGGCCCCTGGGAGCCATGGCTGGGATGGAACCACACCACATGAACGGGTCACTAGGCTCTGGTGATTTGGATGGAATGAACAAGAATTCCCCAAACAATTTAAGTGGCATTAGCAATCCTCCTGGGACCCCAAGGGATGACGGGGAGCTGAGCGGAAACTTCCTCCACTCCTTTCAGAGCGAGAGCTACTCTCCAACCATGACGATGAGTGTGTGACCTCCCCTCCACCCCACCCGACATTATTTGCCATCATTCCGAGGATCTGAACTCCCTTTAGGACACGGCCAAACACATCAGCACCGAATCAGGGACAGGCGCCATTTTGGTTCCACACTAACGCCAGAATGCTGATCGGAGAAAAATCAAAATGGCTGGCGACTACTGCTCCTTGCTCAAAATGAAGGACAATTTCTCCATTTATCACAAACCCCAATTGTGACGAAAACCAGCTACTGAAATGCATACATGACACGTTTTATGTTCTTTGCAGAGTCCCGACATCCCTCTCAGTCCCCTCAACCCTAGAGCGAAgagaggggaggaaaaaaaagaaaaaa

Function

GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132293 lncRNA upstream 178835 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 193545 24837613 ~ 24875666 (+) True G98021
TU132269 lncRNA upstream 233694 24833437 ~ 24835517 (+) False G98019
TU132407 lncRNA downstream 107142 25191064 ~ 25191838 (+) True G98128
TU132401 lncRNA downstream 145460 25229382 ~ 25232400 (+) True G98123
TU132450 lncRNA downstream 169551 25253473 ~ 25258486 (+) True G98163
TU132465 lncRNA downstream 339724 25423646 ~ 25479232 (+) True G98176
TU132466 lncRNA downstream 395426 25479348 ~ 25479604 (+) True G98177
XM_039811421.1 mRNA upstream 39995 25009864 ~ 25029216 (+) False erich3
XM_039811420.1 mRNA upstream 39995 25009943 ~ 25029216 (+) True erich3
XM_039810868.1 mRNA upstream 81143 24947602 ~ 24988068 (+) True slc44a5b
XM_039810945.1 mRNA downstream 12916 25096838 ~ 25178753 (+) False LOC120565286
XM_039810944.1 mRNA downstream 12917 25096839 ~ 25178753 (+) True LOC120565286
XM_039812468.1 mRNA downstream 135560 25219482 ~ 25228281 (+) True mpnd
XM_039810770.1 mRNA downstream 360477 25444399 ~ 25457159 (+) False plin3
XM_039810767.1 mRNA downstream 360478 25444400 ~ 25457159 (+) False plin3
TU132285 other upstream 195337 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 195337 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 285330 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1591393 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1747302 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 448903 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 646336 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 907584 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1708765 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2944050 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile