RNA id: XM_039812055.1


Basic Information

Item Value
RNA id XM_039812055.1
length 2062
RNA type mRNA
GC content 0.51
exon number 12
gene id mfsd8l1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17928603 ~ 17941735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTCGGACTGTCCGCCGGAAGTGATGTAGGTTGGACTAACTCCCGGGGACGCTCTTGAGCATTGAGTAATGTTTGCGAGTTGGGGCTGGTGCTTAAAAAAGCAAGCTGCTCAGCGAGTTCACTGCTCTTCACGGACCTAAACTAACGTCGTGCACGCTCACTGTAGAGATATGTAGAACAATACGCACTCCTAtttaaagttgttgttttttttcattctggTTCTAGATGGGCGTGGTGATATGTCCTTGCATTCGGCTCTAATTGGAAGCACTGCACTCGGGATTATGTCATCTGTGGTGTTTTTTAGAGCGACTGGAATGAGCATGTATCTTGAAGAATAATGAAGGCGACCAGTCAGTCAGTTTCAAGTATAGGAAGCAGTTTATAATAGCCAAACGTGATGGATAATCGACTGAAGAGGAAGCTGACGTTCTTCACCATTGGGCTCATATTTCTTCTTAGCGGTGTGGAATATGCTGTAATATTGCCCACAATATGGATGTACTTGCAGACTTTGGATGCAGCACCTTACTTTCTGGGCTTGGCCCTGTCTGCATTCAGCTTGACTGGCCTCCTGTCGGGACCGCTGTTTGGCCACTGGTCCGACAGAACACGGACCACCAAGAAAATCATTTTGTTTGCCAACTTTTTTGAGTTAATTGGTAACTTGATGTACTTTATGGGCTATTCCAAATGGCTGTTACTGTCAAGCAGACTGGTGGCAGGCATAGGCACAGGTGCTGGCTCATCTATCTTTGGCGTCCTGACCAGAAGCACTGCCCCCAAGGACCGCGCCACTGTGTTTGCTAGTGTCATGGCATGTCGACAAGCTGGccttctgattgGTCCAGCATGTAACGTCTTCCTGAGGCTGTGTGATTTCCACCTGGGTCCTTTCGTGGTCAATAAATATACAGCGCCAGGGTTGTTCATGTGCCTGCTGTGGACTCTCCTTCAACTGGCGGTGATCTTCATGTACTGGGACCTACCGCCTCTAGAGAACAGGGAGGACACGCAGAGTTCAACAGGCCagagcatggaggaggaggaccaCGAGCACGAGAGAGTGCTGGTGGAAGAGGACAATGACGAGGAAAGGCCGCTGATGGGGTCCCAGGAGGTGGAGGGGTCCTACGGCTCGGTCTTGGAATCCAAACCACCCAGATTGGATGCCTCTGCTGCCTCAAATACCACGCTAAATTCTATCTCTGAATCTCCCTCGCCCGAGCTACCAGAGTCCCATGAGTCTTCCTGTTCCTATAAGGAGTTCAGCATATCCCGAGAGTTCCTGAGAGAAGAAGTGGTCGTGCTGCTGGCTGCTCAGTTCATCACCCTCTTCAATCAGACAGCGCTGGAGACCATGGTGACCCCGATGACCCAGAAGTACTTTGGCTACGGGGAGCTGGAGAACAGCGTGATGTACTGTCTCTGCGGTGTGGAGGTGATCGCTGCCTTTCTATTTGTGTACTGGCTGAGCCAGCGTGTTGCTGAGCGAGTGGTCCTGGCCATCGGTCTGACCATCTGCAACGTCTCTGCTGTCTGGTGCCTCATCTTCCTGGCTAACCCACTAGGTGGCTTCCCATGGCGGCTGACTGAGTTCATCATTGGGGTGTTTCTGCAGGTTTTGGGTTTGCCATTTGTAGCAGTCGCTCAGGTTTCCCTCTTCTCTAAAGTTACTGCTGTGGAAACACAAGGTTTCAGTCAGGGAGTGCGTCGCTCAGTGGGCGGTCTAGCTACCATCATGGGCCCTCTGTGGTCTGGTGGCCTTACAGAGAACATGTACATCATGTTAGGGGTGATGATGGCATTGCTGGCACTGCTAACGATGATGCTGGCTTTCTCATACGAGCGGCTGGTTGCACCTGTTGCAGTGGACGAGTCGGACGAGTCGGTCAGCTCTGGCTAATCCACCAGATGGACTATGCAATGAAAGTGGATGTGGAAGCATGCAGggtgataacacacacactgaccgcACACACCTCACCTCCTCCTGAGGGTGTACTTAAATCTTGGACTTGTCAGCTTTGTGTGCAGAGGCTGATCAAAGCACTGTT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129849 lncRNA upstream 36206 17891652 ~ 17892398 (+) True G96273
TU129781 lncRNA upstream 229556 17670708 ~ 17699048 (+) True LOC120565502
XR_005640265.1 lncRNA upstream 230447 17670680 ~ 17698157 (+) False LOC120565502
XR_005640264.1 lncRNA upstream 234241 17670681 ~ 17694363 (+) False LOC120565502
XR_005640170.1 lncRNA upstream 291884 17622984 ~ 17636720 (+) False LOC120564955
TU129944 lncRNA downstream 646303 18586628 ~ 18586965 (+) True G96341
TU129956 lncRNA downstream 672704 18613029 ~ 18613260 (+) True G96353
TU129966 lncRNA downstream 679233 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA downstream 679233 18619558 ~ 18621342 (+) False G96361
TU129986 lncRNA downstream 719317 18659642 ~ 18659881 (+) True G96372
XM_039811848.1 mRNA upstream 1968 17920839 ~ 17926636 (+) False polr2h
XM_039811847.1 mRNA upstream 1968 17921890 ~ 17926636 (+) False polr2h
XM_039811846.1 mRNA upstream 1968 17921953 ~ 17926636 (+) True polr2h
XM_039811629.1 mRNA upstream 53297 17864337 ~ 17875307 (+) True ncl
XM_039811759.1 mRNA upstream 69193 17855631 ~ 17859411 (+) True nppc
XM_039810219.1 mRNA downstream 706378 18646703 ~ 18664623 (+) True nmur1a
XM_039812102.1 mRNA downstream 741745 18682070 ~ 18683397 (+) True LOC120565952
XM_039812101.1 mRNA downstream 743873 18684198 ~ 18685748 (+) True LOC120565951
XM_039811541.1 mRNA downstream 748894 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 761569 18701894 ~ 18712465 (+) True LOC120565635
XR_005640349.1 other upstream 56193 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 56757 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 59802 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 61923 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 69452 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 842275 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 1590442 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3750572 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 4343321 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 4545186 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile