RNA id: XM_039812076.1


Basic Information

Item Value
RNA id XM_039812076.1
length 2020
RNA type mRNA
GC content 0.51
exon number 10
gene id gtpbp6
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39959058 ~ 39963536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaagaagaagaagaagaagaagaaaaaaaacgtaaaCAGTGCACATGGTGGCTCTCTTTAGCATGACTAGCCCAAAGTTACTCTGTGGTTTACTGCAGTCCCGATGACACCAGAAGGAGAACTTCCGGAGGCAACATGACAACACTGAGGAGGATTCATTCATGGCTGCCCCTCCCGCAGCGACTCCGCGCACCCAGCTGTAACGTTAGGACGTTAGGACCCAGCTGTAACGTTAGGACGTTAGGACCCAGCTGTAACGTTAGGACGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggacagcagcagcaacaagctGCACGCTGCTTCAGACACTCAGCACCGGGCACACACACCGGCCGAGAGCTGCGGCTCCCGCACACTCTAGGGCGTTTGCACTCTCCGCATGCAGGTGGAAGAACACAGATGACTTCAGCAGTGGTCAGCACGAGGaggaagatgatgatgaagatttCATTGGTGACAGCGAGGTGGAGGAGCTGTTCCAGCTGCAGGTTCCTGCAGGCCTCGGAGAGGGTCAGCAGAGAGTGTTCATCGTTCACCCTGATGTCAAGTGGGGAAGCAGGAAACAGCACCTGACAACcgCTGAGCTGATGATGGCTGAGGCCGTGGGGCTTGTGAACACTTTGGACAACTGGAGAGTTGTGGACAAGATCATCCTGTCCACCAAAacaccagagaagaagaagatattTGGCAAAGGCAACTTCCAGTCTCTGACAGAGAAAATCAGGCAAACAGCAGGGATCAGTGCAGTGTTTGTGAATGTGGAGCGTCTGTCTCCTTTGTCTGAGAGGGAGTTTGAGGAGGCCTGGGGGGTTAAAGTCTTTGACAGATACTCAGTGGTGCTCCACATCTTCCGTTGCAACGCCAGGACAAAAGAGGCCAAGTTACAGATCTCTCTGGCAGAGATCCCCTTGTTAAGATCTCGTCTGAAAAATGAAATGGCGAACTTGGATCAGCAGGGTGGAGGGTCGAGATACATCGGAGGTTCAGGTGAGACCCTGATAGAGGTGCAGCAGAGACTGCTGAAGGAGCGGGAGATGAAGATTCGCTCAGCGCTGGAAAAACTGCGGAGAAAGAGGCACCTGCTGCGATCCCAGCGGAAACACAAGGAGTTCCCCATCGTCTCTGTGTTAGGATACACAAACTGTGGAAAAACCACCCTGATCAAAGCACTGACTGGCGACAGTGGACTTCAACCCAGAAACCAGCTGTTTGCTACGCTGGATGTCACCGTCCACGCCGGCCAGTTGCCCAGTCACATGACTGTTCTGTACGTGGACACCATCGGCTTCCTGTCCCAGCTGCCCCACCAGCTCATCGACTCCTTCTCTGCCACGCTGGAAGATATTAAACActctGACCTGTTGGTTCACGTGCGAGACATCAGCCATCCAGAGACGGTGAACCAGAAGGTAAACGTACTGAGAGTACTGAAGAACATGCAAATCCCCGACCGGCTGATGAGCTCCATGATAGAAGTCCACAATAAAATTGACCTCATTGACaaCTACCAGTGTCCAGAGCCCGACACACTGGCCATTTCTGCGTTGGAGCAGCGAGGCCTGGATGAGCTGAGGAAAGCAGTGGAAGCGGAGATTGTAAACTCGACaggaaaacacattttagacCTCACAGTTGACCTCAGCACGCCTCAGTTAAGTTGGCTGTACAAGGAAGCCACCGTTCAGGACGTGCAGGTGAATGCAGATGAAGGCTCGGCAGTCGTCAAGGTGATCATCAGCGCCGCTGCCTACGGACGCTATAACAAAGTGTTCAGGCCCGTAGCAAAGTAGAGAGTCTTTCTTGCATCTTGCATGACAGCAGCTCCGAGGAAATGACTGCTCCATGTGGCCTGCAAACttctttttaaagaaagaaaaagactatgtattgtacagtatatttaaatatttgacaATCATTTTATAAAAGACGCTGTCGACATTC

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136839 lncRNA upstream 50548 39905036 ~ 39908510 (+) True G101600
TU136817 lncRNA upstream 86885 39871656 ~ 39872173 (+) True G101579
TU136796 lncRNA upstream 218787 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 219095 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 278532 39680078 ~ 39680526 (+) True G101519
TU136956 lncRNA downstream 20934 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 37369 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 80646 40044182 ~ 40045506 (+) True LOC120565265
TU136979 lncRNA downstream 166265 40129801 ~ 40133354 (+) True G101687
TU136980 lncRNA downstream 171671 40135207 ~ 40135500 (+) True G101688
XM_039812224.1 mRNA upstream 4804 39945687 ~ 39954254 (+) True nit2
XM_039810496.1 mRNA upstream 19651 39923558 ~ 39939407 (+) True tbc1d23
XM_039810497.1 mRNA upstream 19651 39923558 ~ 39939407 (+) False tbc1d23
XM_039810495.1 mRNA upstream 38268 39911630 ~ 39920790 (+) True tomm70a
XM_039810938.1 mRNA upstream 95797 39828957 ~ 39863261 (+) True wwc3
XM_039810974.1 mRNA downstream 42711 40006247 ~ 40036320 (+) True slc9a7
XM_039810975.1 mRNA downstream 42714 40006250 ~ 40036320 (+) False slc9a7
XM_039810895.1 mRNA downstream 88781 40052317 ~ 40069649 (+) True tubgcp5
XM_039810896.1 mRNA downstream 88781 40052317 ~ 40068442 (+) False tubgcp5
XM_039810407.1 mRNA downstream 108506 40072042 ~ 40125946 (+) True cyfip1
TU136718 other upstream 393103 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 494608 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1078453 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2468986 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2826753 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 551557 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1261555 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1262098 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1489138 41452674 ~ 41453306 (+) True G102165

Expression Profile