RNA id: XM_039812084.1


Basic Information

Item Value
RNA id XM_039812084.1
length 4039
RNA type mRNA
GC content 0.45
exon number 21
gene id ttc39a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22625085 ~ 22657026 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGCAGCTACATTGCAGTGCATCTAAATGGGAAAGTCATTATTCCGGCGATGACAGCAACACACCTTTTCATTTCAGGAAGGAGCAGCTGGTGTGCTTGTACTTGTGTCAGTGTGAACTCAGTGTGAGCAGCTCCTCTCcccgtgtgtctgtctgcccatGCCCGCTGTGTAAACCTGCTCTGTCCGGAATATTTTGCCGTTTCACCGGATCTGTGGAATGAGTTTTATTACCAACTGGAGACGCAGCGTGAAGAAAAATGAAAGCAAAAATGATGCCGTGGAGGGGCAAGACATCAGTGACGGCCCAGACTCCCCAAACCGGTTGTCAGTCATAAACAGCCCAGAGTTGGATCCCATCTTCACAGACTTCAAGTTACAGCTACCGGACAACAAAGATGCTCTGCAGCCAACAGATCCATCAAATGGGTGCTTGCGGTCAGACCTGTCGCTGGCTCTGGAGGACTGTATGGCCGCCCTGGATCTTTTCCTCAGAAACGACTTTGAGGAGGCGCAGACCCGGCTTAGATGCAGAACAAAAGACAGCATGTACCACGCCCTGACCTATGCCACCATCCTGGAGATGCAGGCCATGATGACCTTTGACCCACACCACATCCAGACTGCAGGAAACACCATGAAGGAGGCCCAGGCCATCTGTCAGCGGCAACGCAAGAAGTCAAGCTTCTCCAAAAGCTTCACAGAAGAGGAACTCCATGCTGAAGTTTGCTATGCCGAGTGTCTCCTGCAGAGGGCAGCACTCACTTTCCTTCAGGATGAAAACATGATCAGTTTCATCAAAGGGGGAATCAAAGTGAGGAACAGCTACCAGACATACAAAGAGCTTCACACAGTGCTCCAGTCCTCTGGATACTCTCATGGCGACAACCACGACCATTTTGAGTGTGGTGTTAAACTGGGAGTAGGAGCCTTTAATCTAATGATTTCCATGTTGCCCACGCGGACGCTCAAGCTGCTGGAGATTGTCGGTTTCTCTGGTAATAAGgAGTTTGGTCTCCAGCAGCTTCAGGAGGGCTCTGCAGAAAGCACATTCAGGTCCTTCCTATGTAACATGCTGCTGCTCTGTTATCACACCTTCATGAGCTTCATATTAGGCACTGGAGAAGGAGACGTTCAAGATGCAGAGAAACTGCTGCAGCCATATCTTAAAAAATATCCTAAGGGATCCATCTTCTTGTTCTTCGCTGGTCGAATAGAGGAGATCAAAGGCAACTTGGATGGTGCTATCGAGCGTTTTGAGGAGTGCTGCGAGGCTCAGCAGCAATGGAAGCAGTTCCACCATATGTGTTACTGGGAGCTTATGTGGTGCTTCACATACAAGAGGCACTGGAAGATGGCCTACTTCTACGCTGACCTGCTCAGCAAGGAGAACACCTGGTCCAAGGCTACATATGCGTATATGAAAGCAGCCTACCTCAGCATGTTGACTGCAGATGATTGCCTAACCTTTGGGGAGACTGCGTTCACTCTGTTCAGGCAGGTTCCAGGGCTGAAGCAGAAAATAGCGGGGAAATCTTTGCCAACAGAGAAGTTTGCTATCAGGAAAGCCCGTCGCTACCTTGCAGAAAACCCCAttcctcttcctgctcctccACTGGAGATGATGTACATCTGGAACGGCTACACAGTCATTGGCAAACACAAAGACCTGACTGAAGGCATGCTGAAAACACTGGATGAGGCACAGACTAATCTCGAGAGCAGCCCAAgGTCTGAGTTCACCATAGATGATCAGTGTCTGCTAAGCCTCTTGAAGGGCCTGTGTCTCAAACACCTGGGGCATCAAGAGGAGGCCGAACACTACTTTACCCTCGTCCTCTGCAATGAGTCTCAGATCAAGTATGACCACTACCTGGTTCCTAATGCCCTGCTGGAGCATGGCCTGCTGTGTCTGGAGCAAGGAAGAAAAGCTGAAGCTATAAGACTCCTAGAAACGGCAAAGCAAAATTACAAAAACTACTCAATGGAATCACGGACACACTTCCGTATTCAGGCTGCTCTGCACAAGGCCAAGGGCATGGGGGAGAACGGCATCCATGTTCCCTCCAGCCCATAACAGACAGAGGAGGGCACACTAGAGCAGAGATAGTTTCTGTTTCCGCAGTCCCACAATACACTCAGACCAGCCCAGCCCCACCCATTTGGGCGGGCAATTTGTTTTCCCATCAGAAGGGTAGGGGAAGATGGATGCTTGTTTTTCTCATTTGTGCTGCCCTTTCGGGCGACTGCAGTTCTGTGTGGCCCTGACTGGCTAAGGCAGGTCTGCTACGCCCTCTTTCAGAGATATATTATGATGAACGCCACCTCCTTTTGTGATTTGAAATAGAGATGTTGAGAAATGTGCCTATATTTATGAACCATTGCTTTGTTTGTTTAGCACTGTGGCCACCCATAAGGGGCCCACTAGGATAGGAAACAAGGTGACATTTGTGTAGAATAGAAATTGCATATTCCCTCCACTCCTACCCCAGAATAAAAATGTGCCCAGTTCAGGGTGGCAGGGTTGGATCTAATGGAGCCATGGTACCAAAAACCCGCCATACAAATTACTGATACTAACTCCACCTGGCCAGCAGCATACCTTTTACAAAGCTCCCACAccacttaattaattaatttaatgtaattttgTGATTATTGATAAAATAACTTGAGATGGGAGATGACATATTTATGACACATAAATATGTGTTGACATAGTTTGACATCAGGTACATATTATATCATGCAACTCATCACATGGTCGATGAGGACTATGAGACTGTTTTGTACTGTGTTATTTTATAGATTTTGGTTGACAGGTTTCACCCATATTTAGATATTTGATCAAAATCAATATGACCTGATTAGAATTTTTATATGTTGGATTCACGTTTACACTACATAACCTTTGGTTGATTGTGTTTCTCAGAGTGAGTTTCATTGTGTATTTTAAATTTTCTTCCTTTCCTTAAAACATACCATCGAAAGACACACATTTATATGGGATACTTTATTTCAGTCTCCTTCTGAAGACATAATTCAATCTGCAATCCTGTTACAATAACCATTACATGTAATGACTTTTGCACAGAACTGGGAAACCAGCCAGCCATGCAAACTCTCCAGAGTCAAAGAATCAGTTGCAGTGAGAGTTGTcctttacatttatatatcgtAAATGGCACCTTTTGCACAAATTATCCCGTTTTAAGAGGACAGTTGAATGTGTCTTTTTTCTGAAAGGCAGActccctccttttctcctcCTGCTGTGTGGGACAGGCTCCAACAGTACTTGAGCTTGAACAAACAGGCCATTCACGCCGAGCAGCAAAGGACTGCGTGCTTGTCCGCCTGTTGCATCTTTAGTGAGTGATGAAGGTCTGAATGGGAACCACCATAGTCTTCCTGCTTTGTGGACGTCCTCTGCTGCTCTTGTATCAGCCATGCTTGACTACAACCATCTATAAAAGGACATGAACATCATAACCACGCTCCTGTGTCAAATATTAATCTGTATATGAACAAACACTTGTAATGACTGATGataagacagaaagaaaggggTCACCTCTAATCGTGTTGCTGGTGAGGTTATTTGAAGGGCTGTGTCTCGGCAACAGAGTGTCAAACTCAGATGGTGTCTCAAGTGTTGGAACTAGAGCACTGATGATTTATTCATGATTAGAGTAAGGTTTGGGATTCAAGACGATGACTAGGAGTCAGtttcaattcattttaatggTAAAGGaaatttacttttaatattgttttaacAGCTCtctgaaatatttaaataacaaattatatttaattttctgATAAATAATTAagcttatttttctttttttcctccctttgGTTTTGCAGATATAGTTGAAAGAAACTAACCAAATTTAGTGGCATTCTGATGTTTACAAGCAGCGTATTTCTTTGGGCACGGCTACTACTGAGCAGAATGACATTCCTGTACATACTGAATGTTTCTATTGTAATTTAAGATGAAATGATAAgcaactaaaaaaaacacatccca

Function

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131439 lncRNA upstream 29808 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA upstream 29808 22594787 ~ 22595277 (+) True G97410
TU131429 lncRNA upstream 48537 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA upstream 48537 22571795 ~ 22576548 (+) True LOC120566218
TU131333 lncRNA upstream 302230 22322492 ~ 22322855 (+) True G97338
TU131444 lncRNA downstream 473 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 473 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 123581 22780607 ~ 22800145 (+) True LOC120565733
TU131455 lncRNA downstream 123748 22780774 ~ 22799672 (+) False LOC120565733
TU131548 lncRNA downstream 208801 22865827 ~ 22870448 (+) True G97485
XM_039812081.1 mRNA upstream 1550 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA upstream 1550 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA upstream 1550 22591643 ~ 22623535 (+) False eps15
XM_039810960.1 mRNA upstream 35766 22584206 ~ 22589319 (+) True calr
XM_039810961.1 mRNA upstream 42430 22577197 ~ 22582655 (+) True tor3a
XM_039812087.1 mRNA downstream 454 22657480 ~ 22673689 (+) False rnf11b
XM_039811742.1 mRNA downstream 41054 22698080 ~ 22764088 (+) True faf1
XM_039810236.1 mRNA downstream 117982 22775008 ~ 22778191 (+) True dmrta2
XM_039811721.1 mRNA downstream 159525 22816551 ~ 23246315 (+) True agbl4
XM_039811718.1 mRNA downstream 159525 22816551 ~ 23246315 (+) False agbl4
XR_005640351.1 other upstream 48883 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 49937 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 50161 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 50413 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 51393 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 664496 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 817756 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2124892 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2195275 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2210991 24868017 ~ 24873874 (+) False elovl1b

Expression Profile