RNA id: XM_039812101.1


Basic Information

Item Value
RNA id XM_039812101.1
length 971
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120565951
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18684198 ~ 18685748 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGGTCAGAATCTAACCCGGCCCGCTgcagcaaggactgagcctaTGTACATGGGCGCATGCTCAACCCGGTTGAGCTACCAAGGTGCCCCCAAACACAAACAAGCAAGTTACATTTTCATTGCATAAGCTTTCCCTCTCTTTATTTCTGTGTATAAACAAAACTTAAGGAAACAAGGTTTACACTTTTAAGTTTCATTTTCCCCAGAATCTATAGTCATGATGAGTCATTTTACAAGCTGTTTGTATACTGTGCAGATCAGCTGTTGTCTCATCTCTTCCTCAGCCACCAGCAACACTGACACTGACAGGATGGCACAGCCAGAGTGGACATGTATCTTCCAGATGAAAACAAAAGATCTTAAACAAGGAGACACCTGGCGTCTGGAGTTTGATGAAATTATTGTACCTGACTGCCCAAACCCAGGCTGGGAGCAGTACATCAGGAACACATGTGCAAGGTTCAAATGCACCAAGTGTGGAAGAGGCTGGCCTTCCAACCGGGTGATGGTGGTCTTTCACATGCGCCTGACATCCGGGCATGGCGTTGTCAAGGTGAGGCCCTTCTGTCAGAATTGCAAGCAGTGCAGCGATGCTCCAATGGAGAAGCCCAAAATCACCTCAGAGAACATCGACATCCTCCTGGAGAATCTGGTGGAGAAGATAAGAATCAAATGCTACCATGAAGACCTGGGCAAAGGACACAGGCCTTTTATTAGCCTGGATGTCAAAAGTCCCCATGAGCCTGCTCATTGTGAGGCCTGCATAGCAGGCATCTGTACAAGGAATTGAGCTTGTGTGGCTTTTAAGACAGCCTTGTTAATAACTTAAAAGaataattattatttgttaGCTCATATTAACAAAGCATTATAAGACTTCCTCCTGTTATTCTGTTTCATTGCATTGTgccctttatatatatatacagtgccttgcgaaagtattcggcccccttgaacgtttcgacc

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129984 lncRNA upstream 19085 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 24317 18659642 ~ 18659881 (+) True G96372
TU129966 lncRNA upstream 62856 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA upstream 62856 18619558 ~ 18621342 (+) False G96361
TU129956 lncRNA upstream 70938 18613029 ~ 18613260 (+) True G96353
TU130030 lncRNA downstream 58768 18744516 ~ 18744857 (+) True G96398
TU130032 lncRNA downstream 63372 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 96446 18782194 ~ 18859921 (+) True G96417
TU130082 lncRNA downstream 338535 19024283 ~ 19029464 (+) True G96438
TU130094 lncRNA downstream 370593 19056341 ~ 19057812 (+) True G96445
XM_039812102.1 mRNA upstream 801 18682070 ~ 18683397 (+) True LOC120565952
XM_039810219.1 mRNA upstream 19575 18646703 ~ 18664623 (+) True nmur1a
XM_039812053.1 mRNA upstream 742463 17928603 ~ 17941735 (+) True mfsd8l1
XM_039811541.1 mRNA downstream 3471 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 16146 18701894 ~ 18712465 (+) True LOC120565635
XM_039810616.1 mRNA downstream 30006 18715754 ~ 18733910 (+) True LOC120565156
XM_039810620.1 mRNA downstream 30186 18715934 ~ 18733910 (+) False LOC120565156
XM_039810617.1 mRNA downstream 31551 18717299 ~ 18733910 (+) False LOC120565156
XR_005640349.1 other upstream 811787 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 812351 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 815396 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 817517 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 825046 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 96852 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 845019 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3005149 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3597898 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3799763 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile