RNA id: XM_039812102.1


Basic Information

Item Value
RNA id XM_039812102.1
length 828
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120565952
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18682070 ~ 18683397 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTATGGTCTCGCAACCTAGGCATGATGACTCATTCTCACAAGTTGTTTGTATACTGTGCAGAACAGCTGTCAGTGTTTTGTATCTTCCTGATCCACCAGCACTACTGGAACTGACAGGATGGCAGAGCCAGAGTGGACAAGTATCTTCCAGATTACAGCAAGGGATCTTAAAGACTCCTGGCGTCTGGAATTTGATGAAAGTATTGTGCCTAACCGCCAACAACCGGGCTGGAAGAAGTCTATTGTTTACACAAGTGCACGGTTCAACTGCAGCGAGTGTGGAAGACGCTGGTCTTCCAACAAGGTGATGGTGGTCTGCAACATGCGCCTGGCATACGGGCAGGGCGTTGTAAAGGTGAGGCCCTCCCGTCAGAACTGTAAGATTTGCAGCGACGCTCCGATGGAGAAGCCAAGCATCACCTCAGAGAACATCAAACCCCTCCTGCAGAATCTGGTGGAGAAGATAAGAATCAAATGCTACAATGAAGACCTGGGCAGAAAGAAGAAGCCCTTTAGAAGCTTTGATGCCAAAAGTCCCCATGAGCCTGCTCATTGTGAGGCCTGTATGCAAGGCATCTGTCCAAAGACAAAGTTATATTAGCAAAGCGTCAGTTGTATTAGACTTTCCCTCCTGTCATTATGTTACATTGTATTGCTTGCATCTTTTTATATGATAAAGTGCATGTAAGCTTTCATAAATGATTtattcttgttgttttttttcctgttttttgtcTTCTCAAAAGCATTAAACAAGCCTTCTCTTAAACAGAAATGTGTTAGATAATCAAAGGTTATGCAAGCAATaaactaaatgtatttgtgtt

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129984 lncRNA upstream 16957 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 22189 18659642 ~ 18659881 (+) True G96372
TU129966 lncRNA upstream 60728 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA upstream 60728 18619558 ~ 18621342 (+) False G96361
TU129956 lncRNA upstream 68810 18613029 ~ 18613260 (+) True G96353
TU130030 lncRNA downstream 61119 18744516 ~ 18744857 (+) True G96398
TU130032 lncRNA downstream 65723 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 98797 18782194 ~ 18859921 (+) True G96417
TU130082 lncRNA downstream 340886 19024283 ~ 19029464 (+) True G96438
TU130094 lncRNA downstream 372944 19056341 ~ 19057812 (+) True G96445
XM_039810219.1 mRNA upstream 17447 18646703 ~ 18664623 (+) True nmur1a
XM_039812053.1 mRNA upstream 740335 17928603 ~ 17941735 (+) True mfsd8l1
XM_039812057.1 mRNA upstream 741719 17928604 ~ 17940351 (+) False mfsd8l1
XM_039812055.1 mRNA upstream 741745 17928604 ~ 17940325 (+) False mfsd8l1
XM_039812054.1 mRNA upstream 741777 17928604 ~ 17940293 (+) False mfsd8l1
XM_039812101.1 mRNA downstream 801 18684198 ~ 18685748 (+) True LOC120565951
XM_039811541.1 mRNA downstream 5822 18689219 ~ 18701367 (+) True LOC120565634
XM_039811542.1 mRNA downstream 18497 18701894 ~ 18712465 (+) True LOC120565635
XM_039810616.1 mRNA downstream 32357 18715754 ~ 18733910 (+) True LOC120565156
XM_039810620.1 mRNA downstream 32537 18715934 ~ 18733910 (+) False LOC120565156
XR_005640349.1 other upstream 809659 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 810223 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 813268 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 815389 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 822918 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 99203 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 847370 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3007500 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3600249 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3802114 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile