RNA id: XM_039812120.1


Basic Information

Item Value
RNA id XM_039812120.1
length 3459
RNA type mRNA
GC content 0.48
exon number 4
gene id ndnf
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39295336 ~ 39306238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTCTTCCTGCAGAGAGCGCAGGGAAGAAGTTCGCACCAGTTTTGCTTCCAATCCAGTGGAGGTTTCAATAGCAGCAGCGCGGCAGGGGAGGGACGCACTGCCAGCACTCAGGatacccactcacacacactctcacacacacacactcacacacacacatacactcctgCCCACTAGAGACCAGTTAAATCCGCAAGAAAACTGCAAACACGCACCAGAGCAGTCGCCTAATCCGATTGATAGGCACCAACAATAGAAGTGAAAACTGAGGGAACTACTGGACACTGCAGAGGACAACTTGtgttttgatttttcttttaaatcgcTTTAgttgtaaagcacttttttttcttttctttttttttaatcttggtGATATCAGAGTGGCTTTGAGAGCAAGAAGCGCCATCCGTCAGATAACTTGGCCGTTTCACATTCTGAAAGAATGAGGCAGTGTAAAGGTTGGAGTGTGATGCTGCTGGCTCTGTTTGGACTGGGAGCCTTGGCCCAGAAGCTGCCCACGAGAGACGAAGGGCTCTTCCAGATGCAGATCAGAGACAAGTCGCTGTTCCACGACTCCTCGGTCATCCCGGATGGAGCGGAGATCAGTGGCTACCTGTTCAGGGACACACCCAAAAGGTACTACTTTGTGGTGGAAGAAGACAACACACCCCTGTCTGTGACCGTGACACCTTGTGATGCTCCTCTGGAGTGGAAACTCATTCTGCAGGAGCTGCCAGAAGAGGCCAGTGGAGAGGGATCAGGAGAGCCTGAACCTCTGGACCAGCAGAAACAGCAGGTGACCGTCGACGACGGGACGGAGCTCTTCACCTACAAGGGCAATGATGTGGAGGCCTATGTGGCCACCAGCACGCCCTCTGGCCTCTACCAGCTGGAGCTGTTGTccacagagaaagacagcaaCTTCAAGGTGTACGCCACCACAACTCCAGAGTCTGACCAGCCCTACCCGGAGCTGCCCTATGACCCGCGTGTGGATGTGACTGCACTGGGCCGTACCACTGTCACCCTGGCCTGGAAGCCAACACCAACGGGCTTTCTGATGGGCCAGCCTGTTCAGTATTGCGTAGTGATCAACAAGGAGCACAATTTCAAGAGCATGTGTGCTGCTGAAGCTAAGATGAGCGTTGATGATGCCTTCATGCTGGCTCCGAAGCCTGGCAGAGACTTTAGCCCGTTTGACTTTGCCCACTTTGGCTTTGTGCCCTCTGACAATGGTTATGGCAAGGACCGAGGCCTCACAAGTAACAAGATCTCACGGGCATACACAGCCAAGCCCAAAGCATCAGACATTCAAAAGGTGTGTATaggcaataaaaacattttcactgTATCAGACCTGAAACCAGACACGCAGTATTACTTTGACGTGTTCGCTGTGAATTCTGCAAGCAACACCAGCACGGCATACGTGGGAACATTCGCCCGCACAAAAGAGGAAGCTCGCCAGAAGACAGTGGAGCTGAAGGACGGCAAAGTATCGGATGTTTTCATCAAGAGAAAGGGCAGCAAGTTCCTGCGCTTTGCTCCTGTGTCTTCCCATCAGAGGGTCACTCTGTTTGTGCACACATGTCTGGACGCTGTGCAGGTACAAGTGAGGCGCGACGGAAAGTTGCTGCTCTCCCAGAACGTGGAGGGGGTACGGCAGTTCCAGCTGCGGGGAAAGCCAAAAGCCAAGTACCTGATCCGTTTGCGGGGCAGCAGGAAAGGGGCCTCCACTTTGAAAGTGCTAGCCACCACACGACCCAGTAGCAAGCAGCCCTTCCCGTCGCTTCCGGAGGATACGCGCATCAAGGCCTTTGACAAGTTGCGCACCTGCTCCTCTGCCACTGTGGCCTGGCTGGGCACGCAGGACCGCAACAAATACTGCATTTACCGCAAGGAGGTGGCTGACAATTATGGCGAGGAGCAGCGACGCCGGGAGCAGAACCAATGCGCCGGGCCAGAGACCCGCAGGAAGTCAGAAAAGGTCCTGTGCAAGTACTTCCACAGCCCGAACCTGCAGAAAGCTGTGACTACAGAGACCATCACAGGTCTGGAGCCAGGCAAGACCTACCTGCTGGACGTTTACGTTGTGGGACACAGTGGTCACTCAGTGAAATACCAGAGCAAACTGGTGAAAACAAGGAAATACTGCTAAATGActctgcaaagaataaatctattataaatatatatattaaataagtTTATTTAACTCTAAGTGATATTCTACTAAGGAGTGTATACAGACTGACTACTCACACAGCGGATGGGCCTGTGGCAGTGACTGAACTgtttgtagagagagagagagagagagatatcaacctgtatatttatgtttacatttcATTGCAGCACCTCTGGGTGGCCCATAGCGTGAGGTGCTCTGATACGAAGCTTGTCGTCTTGACATGATGTTGCCACTGGGGAGGCAGAACTTCAAAGAAGATCATATTTCATCTTGTATGTTTCTTTGTTGCTGCATGACATTTGCTTTTGTCCGTCATATCTGTGCATTACTTCAGTTTCGCATCACGTTGACCGGAGGAGATACAGTAGCTGCCCGCATTGTATAGATCTCTCACTGCATATTCACTACATGTTTTAGGAggaatttaaattattttatactTTTGGTCTCTCTTTTTGattgtctgtttttattgatGACAATAATAACTGTTATGAGGAAATTCCAGTTTTATGAGGAAGTTGTCGTAGTTCAGACATTCCCTTATGTATCTCAGTCAGTGTTTGCTCTAGAGCCCATCTTGTAAATGTGTTCTGTGCTGGAGATCTGTGTTATTATCACTGTATCGCTGTGTGTGTCACATGTACAGAGTTGTCCTGCCAATATTCATGTACATAAACACTAAATATAGAACAAGTAATCCCTCTGTCACCCTGGGTGTCATGTTCTTTTGCCAAGCAGTTAACATCACAGTCATGGCTGCGAGTTGAAAGAGCACACTGCGCATTGTGTTAAGACGCAGACATCTAAATCAGGGTTTCATAAGCACAACTTGATACCCGGAGTGATTCCGAATGATGACTTGATCCCAAAAATGATTTGTGAcaagaaaagacagacagagggggacATATTTGCTGGAAATAACTTTCAAGACACAAGTGGTGTCCAAGCTCCACTAAAAATACATGAGCTCGTTTGCAATCCAATCAGCGTCTTGTTGACGGACATTCTCATAGATACAGTAATAAATCAGTGCATCTTAGCATATAGCTACAAGTGCATTTATTTGTCTATGTGGGGAACTATTCATGTTTTGTGttgaggaattaaaaaaaaaagaaaaaaagtctaccTAGAACTGCTCTCACAAGAAAGTCGGAGCAAAAATGTACGTTGAAAGTTTGTTTTAGCCCAGGCCCTGTTTCACATGGTCCCCTTGTAGTCTTTGTGGTTTTTTGTATAAAAAATTACACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136663 lncRNA upstream 16383 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 104555 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 116590 39178244 ~ 39178746 (+) True G101427
TU136521 lncRNA upstream 271756 39018380 ~ 39023580 (+) True G101364
TU136523 lncRNA upstream 277663 39016711 ~ 39017673 (+) True G101365
TU136677 lncRNA downstream 50245 39356483 ~ 39361708 (+) False prdm5
TU136689 lncRNA downstream 131416 39437654 ~ 39438065 (+) True G101484
TU136719 lncRNA downstream 257903 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 373840 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 433109 39739347 ~ 39740271 (+) False LOC120565298
XM_039810865.1 mRNA upstream 83572 39202848 ~ 39211764 (+) True fbxl5
XM_039810734.1 mRNA upstream 164496 39091337 ~ 39130840 (+) False palld
XM_039812444.1 mRNA downstream 17346 39323584 ~ 39356737 (+) False prdm5
XM_039812443.1 mRNA downstream 17350 39323588 ~ 39361733 (+) True prdm5
XM_039811658.1 mRNA downstream 147882 39454120 ~ 39464444 (+) True LOC120565708
XM_039810213.1 mRNA downstream 172615 39478853 ~ 39487478 (+) True slc34a2b
XM_039810214.1 mRNA downstream 172636 39478874 ~ 39487478 (+) False slc34a2b
TU136417 other upstream 414731 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1805264 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2163031 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2596467 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2760797 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 154208 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 254884 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1208855 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1918853 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1919396 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile