RNA id: XM_039812123.1


Basic Information

Item Value
RNA id XM_039812123.1
length 2630
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120565966
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10681539 ~ 10691086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actctgtgataataaaaacaactggagactgtgcaGCAGAtttatgggtctgataacattttattaaatcagaatcgGACCATAGGCTAGTGTTTCTGTCACtccctgttcagcctgaaggctgctggaatcggctggaaaactgtccgacttgacagcggatttttttcttcagttcatctcgaacgagcctattttgccttgttgttgttattgttgccaACTACAGTCGCTAAAGCGTAATGGAGACCGACTTGCCTTTCTCATCTCGTCGGTCACCTGTGGTGTGTTTACACGGCTGCGTGGCGTCCAGTCAGCGGCTAGCTTCTAGTATAGGAGTCGacATCCTGAAGCGTGGGGGTAATGCAGCAGATGCAGCGGTTGCCATTGCAGCAGCGCTCGCGGTAACCGAGCCGTTCAGCACCGGTCCGGGCGGAGACGCCTTCTGCTTGTTCTACAACGGAAACACTGGAGAGATCAGAGGGATTAACGGCAGTGGTCGTTCGCCCAGAGCTCAGACCCTGGACTTCCTGGAAGGACTTGGTTACACTGCGGAGACCCCCCCTTCACCTTCCGATGCCTTGAATGTCACAGTACCAGGGGCCCCTGCATGCTGGTGCGACACCGTACAGCTGTTTGGTAGTCAcaagCTGTCCTTGCAGGAGGTGCTGAGCGGGGCGGCAGAGCTTGCAGAGGTGGGGTTTCCTGTTGCCGAGGTAACAGCTCACCACTGGGAAAAATTGGTGGCTGCTCTGAGAGATGCTGGGAAGGAACTAAATAGAGACCTGCTGATTGATGGTCATGCGCCAAAATGTGGACAAGTATTCAGAAACCCTTCCCTGGCCAAGACTCTGAAGGAACTGGGTGAGCGGGGGAAACCAGCTTTCTACCAGGGCAGAGTGGCCGAAGCCATCGTCGATATCATTAACCAAAATGGAGGAGTCATGACTCTGGATGACCTCAGCAGCCATGAAAGTGAGGTCGTCACCCCCATAAGCACAGAATACAAGGGTGTGTGTCTATGGGAGCCTCCTCCGAACAGCCAGGGATTGGTTGCCCTGCTACTGCTCAACATTCTGGAGAACTTTCCTCTCAGAGCTGCAGGCCACAACAGCTCTGACTACATCCATGTACTGGTGGAGGCCGTGCGCTTGGCACAAATAGACGCCCTGTGTTACCTGGGCGATCCAGACCATGTTACCATCCCTCTGGAAACCTTACTGGACAAGAGCTACAGTCACCAGCGAGCGCAGCACATCAGCatggacagGACCATGGAAGGAGTGCAGCCTGGCTTGACCGGAGGATGTGACACAGTCTATTTCTGTGTGATTGACAGTCAGGGCAATGCCTGTTCTTTCATCAACAGCATATATGCTGGCTTTGGAACTGGGCTGGTCCCTAAGGATTGTGGATTCTCACTCCAGAATCGTGGTGCCAACTTTTCTCTGCATCGTAACCATGTTAATTGTGTTGCTGGGGGGAAGCGGCCATATCACACCATAATACCTGCACTTCTCACTGACTCTGCAACCACATCACAAAAACCACGACTCCTCGCTGCACTGGGGGTGATGGGGGCTTTTATGCAACCTCAAGGACACGTCCAGGTGTTGTTAAACATGTTGGAGTTTGGGATGAATCCTCAACAAGCTCTGGATGCACCAAGAGTCTATGTACAGTATGACCGCACAACTGATGAGTGGTCTGTTAATCTGGAGGAGGGGGTCCGCCAGGAGGTAGCCGAGGAGCTGAGAAGACGGGGCCACAAAGTCagctggccaatcacagGTCACAAGAGGTCTCAGTTTGGGCGGGGACAGATCATCACAGTAGGGGATTGGTGGAACCCATCTGTCAATCAAGCCGATGGTCCATGCAGGGTGCTGTGGGCGGGATCAGACCCCAGAGCGGATGGATGTGCTCAGGGATATTAAACATACctgacctcctctcctcttccctgcAGATGTAATATTCTGATAAACTGATTACAAAACTTTCTGAAGGCAAAATCCTTTATGTGTAGAGCAAAAGTACTATACATATTTGGTGGTAATTTACAGTAACCTTTTTCCTTTGGTTTCTTTAATTAGAGGATTGGTTTTATGACAACAACTTAGGTTTATAACACAGTCATAGCACCGCATCATAGCATAGCACATAAGTGTCTTTATTCATCATATGTCCCTCCACATCCTCTTAAGTCCAAATTGAAAAACAAATCTTTGTGTGACATTACATGACATACCAAAGATGCCCTTCTTCAACCCTGGTTGAGATAATGATCTGTTTCAATGTCTTTAATTAGTTGCTGCCGGTCTAGAAACGACAACAATATCATATACATATAACCCTCTTTCCTCAATGAAATGATGATCAAAtcataggctatatatataatCTTTTCTCTGGATGactttttacaaaacaaattgAATTTAGATAATGTAATGTGATTCAATTCAATCAGTGTTATATCTTCATTCAAGTTCCCTTTGCATCATTTTCTTGCActttaaactaaaatatatttacagattTAACAGTCTGCATTTCAAGTGATGCTGAATCTATTCATGATTTTGTAAATCTTTTAACATtgacaaataaatgtaatttattttcaa

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127515 lncRNA upstream 150158 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 172001 10507652 ~ 10509538 (+) True G94450
TU127411 lncRNA upstream 267778 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 276306 10339236 ~ 10405233 (+) True G94426
TU127597 lncRNA downstream 20117 10711203 ~ 10711496 (+) True G94587
TU127612 lncRNA downstream 225839 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 257417 10948503 ~ 10948822 (+) True G94604
TU127624 lncRNA downstream 272462 10963548 ~ 10977065 (+) True G94609
TU127628 lncRNA downstream 305391 10996477 ~ 10997201 (+) True G94613
XM_039811765.1 mRNA upstream 12653 10653639 ~ 10668886 (+) True slc25a24
XM_039811026.1 mRNA upstream 54500 10617375 ~ 10627039 (+) True henmt1
XM_039811027.1 mRNA upstream 54500 10617375 ~ 10627039 (+) False henmt1
XM_039811028.1 mRNA upstream 54500 10617581 ~ 10627039 (+) False henmt1
XM_039811527.1 mRNA upstream 72313 10592837 ~ 10609226 (+) True LOC120565623
XM_039812277.1 mRNA downstream 4937 10696023 ~ 10714882 (+) True tm4sf18
XM_039812280.1 mRNA downstream 31816 10722902 ~ 10731305 (+) False LOC120566058
XM_039812279.1 mRNA downstream 31829 10722915 ~ 10733961 (+) True LOC120566058
XM_039812278.1 mRNA downstream 57843 10748929 ~ 10759929 (+) True LOC120566056
XM_039811575.1 mRNA downstream 255846 10946932 ~ 10948316 (+) True si:ch211-162e15.3
TU127375 other upstream 521732 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 733309 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 778350 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 835558 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 835735 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 225839 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 255890 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 557489 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 737945 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2314490 13005576 ~ 13100445 (+) True raver2

Expression Profile