RNA id: XM_039812141.1


Basic Information

Item Value
RNA id XM_039812141.1
length 5224
RNA type mRNA
GC content 0.57
exon number 61
gene id LOC120565976
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11684362 ~ 11786933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTTTAAAGTCTGGGATCTCTGCTGCCTGGACAAATGCATACAAATGCATTTAGGAGCTCAACGGACAAGGAGTGGACACGTTTCCGCGGCAGCAACGTGGAACTTTATCCTGCTCCTGTCAGTATGCTCAGCAGTACTTTCTGGAGAAGAAGACTACCTAGCTCAAGGAGTGGATATCCTCTATCGACTGGGCCTTACAGCTCAAAGCAGTGCAGACGAGAGGACAAGCTTACCTTCGACTGCACACACCACTGTTCCCTCACCTTTGAATCTCCCTCTTTCTGGATATGGGGTATTATTCAACTCAAACTCCCTCTATGAGGCTCCAGCAGGCAGTCTGTTCCCGCCTGAGATTGGCGAGGAGTTCTCTGTTGTGGTTAGCCTAAGCTCCTGGCGAGCAAacaatgcttttctttttagtGTCAAAGACAGCAGGGACAGGCTGCGTTTTGGCATTCAGCTGCTGCCGCGCAGGGTGGTGGTTTACACTGCCGAGAAAGCCTCCATCTACTTCCCCTACAACTGGCAGGATGGGCGCCAGCACCCTTTTGCTGTTGGTGTTCGTGCACGCTCAGTGTCCTTCTATGCGGATTGTGGGGCGGTGCAGCAGCGGGAGCAGACCCTGGGGAGATCTCAGACACTGGGGGATTCTGGGGGACTCTTCACTCTGGGGAGGATGAACTCCAAAGCGGCACCTTTTAATGGTCGAGTCTGCCAACTAGATATCTATCCCTCCGCCCAAGCTGCCGCGCACTACTGCAACTACCTTAAAACACAGTGCCGGCTGGCCGACACTTACCGATTGCCTTTGCCACACCCCGGTTTGGATATTGAGGCAAATGACCCTCCTTCTAACCCCTTGACAAAGTCCCTTGTTGGAGTAGCAGCTACCCATCATAACCCCTTAAAAGCCACAGCAGCTTTCAATGTGTCCCCAGGCAGTTTGGTCACACAGTATTCAACACTGAGCCCATCAGCACAACCTCATCTGGGGGATCAGAGCCACCTTTCCAAATTGGATCCCCTGGCCCACTCCACCACATCCTCGCTTCAGCCTGACAGCCCCACCTTAGCTACCTTGAGTGGACGAGCAGTTCTGGATCTCGCCCATAGCACAACTATCACCACTACCAAAAATGTGTTGGCAAAAGCCAGTAGCCCCCAGAGGGACACTGATCACTCTGAAAACAGCACAGAGGAAGACAGCAGCTCCGGGATCCTACAGACTCCAAATGCCACCCCAGGCCTGGTTTCCCTAGTCAGGCAAAGTCGAGTGAAGGAAGGACTCAGGAACAATTCCATCGCCAGCTCCAGGGACCCTCACTCCGGGCCTCACCAGACTCGTCAGCCCCTGGAGACTCATCTGAGAGCCAACGGCACCACTTTGTACCGGGAGAATCAGGTGGACACCTCAGAACAGCATGACCTGGATGGCAGCTATGATGACGTAGACATGGGAGGATATGATTATGGATATGAGGATCCAGACTATTTCTATGACTATGATGATGGTTTACGTGGCCCCAAAGGAGAGCGAGGTGCTCCGGGTCCTCCTGGTCCCGCTGGTTTACCTGGTCCTCCAGGAAAAAGAGGTCCTCGGGGTCCCACCGGTCCACATGGAAGCTCAGGACAGCCTGGACCACCTGGGCCCAAGGGTTCAAAGGGAGACCCCGGGCTGTCTCCAGGCCAGGCTCCATCGGGAGAGAAGGGTGACAGAGGTCCACCAGGTCTTCCTGGGCCGGATGGATTTCCAGGTCCACCGGGTCCTAAAGGTTATCTAGGGCCAGCCGGACTGCCAGGAGAACAAGGCATACCAGGACCTCCTGGGGAAGCCGGGGCTGCAGGTTACCCTGGCAGGCAGgGCTCAGCTGGGCCACAAGGTAACCCGGGGCCTAAAGGTGTCCGTGGTTTCATTGGGCCTCCTGGCGTTGCTGGGCCACTGGGGCCAGAGGGGGAGAAAGGCATTCCTGGTCCTGTTGGAAAACCTGGCCCCAAAGGAAGACACGGTGTGGTGGGTGATGCGGGGGAGAGGGGGCCTCCTGGTCCTGATGGCAATGAGGGGCCTGTTGGTGGGATTGGCATTAGCGGCTTTCCTGGTCTGAGGGGGGACCCAGGGCCTGAGGGACTGCGAGGACTGCCTGGTCTGGTGGGACCTCAGGGCCCAGCAGGACGAGCCGGCCTGCCTGGATTGAAAGGTGATAAGGGTGAAGTGGGACAAATGGGCGAACCAGGAGAGATGGGGTACCAAGGTGATAAGGGTGTTGCTGGTGCACCTGGTCCTACTGGGCTAAGAGGGAAACCAGGACCACCGggtaaaatcggtgaGATGGGGGCACAAGGACCACATGGGCCTCCAGGACCAGAGGGATTTCCTGGGGACATTGGAGTACCAGGGCCCAACGGTCTACCTGGACCAAAGGGTTTGCAGGGTGTCAGAGGGCCGCAAGGTCCGCTGGGTCCTCAAGGAACACAGGGTGATGAAGGACCACTTGGACCACCTGGCAGCGCTGGCCCTACTGGGAGACCAGGAAGGAAAGGCTACATAGGCGAACCTGGCCCCGACGGTTTAGAGggagagaaaggggacATGGGAAATGTTGGAAAAATTGGACCACAAGGTCCACTAGGCCTGATTGGGATAGCTGGTGGGATCGGAGTTCCGGGTGAAAAGGGCGACCGAGGACCAGCAGGTCCAACCGGTCCAGTTGGGGAGAAGGGGCCAAGGGGCTATCCAGGGTTGCCAGGAAGTCCAGGGGACATCGGCCTGCAAGGTGCACCTGGTCCACAGGGGCAGAGGGGTAGTGCAGGCATCGCTGGGACAAAGGGCAGGAGGGGGCCCCAAGGTCCAGATGGCCCACTGGGAGAACCAGGCCCTGAGGGCACCAAGGGTGAAAGGGGTGACATTGGACAAAAAGGAGGGCCAGGATTCATAGGCAAGGCTGGCAGTCCAGGAGAGAGAGGCCCTCCTGGGAAGAGTGGTAAACCAGGTATTCCAGGCAGCACCGGGGAGAGGGGACCCCACGGTGAACCAGGACCCAAAGGACCTTCTGGAGAGGCTGGACCTGATGGAGAGCAAGGACCTGaaGGTGGGCCTGGTGCAGAGGGGGAACCGGGTGCCATCGGAGAgccggggtcaaagGGTGATGTTGGGCCTCCAGGAGCTGAAGGGGAGCAGGGACAAGAGGGAATGAGAGGTCCTCCTGGTCCTCCTGGTGAAGACGGTCCTCAAGGAAAAGATGGAGCCAAGGGTGAGCCTGGTGAGCGTGGGCCAATTGGAGAGCCAGGGGACAAAGGAATGGAAGGAGACTCTGGGCTCATAGGACCACCCGGAGAGCCTGGGAAACAGGGCTTTCGTGGGCCAGAAGGAAAACTAGGGGCCCCAGGGAACAGAGGACGACACGGAAAGAAGGGAGAGAGAGGTCCTCCAGGTCTTGTTGGTGAGATCGGCACACGAGGAGACATCGGCCAGCCAGGCGAGCCGGGTCTGAAAGGTGCCAGGGGAACTCGAGGCACACCAGGTCAGCCTGGAGTCATGGGGATAGAAGGGCAACCAGGACTGGCAGGATACACAggtcaCCCTGGCAAGCCTGGGCCCATTGGACCACCAGGGCCTAAAGGTGAAAAGGGTTATCCAGGCGAGGACAATAAGACCCCAGGACTGCCAGGGCCCTTAGGTGAACCAGGGCCCCCAGGAGAACGAGGAGAACGTGGAGAGCCAGGGGATGAAGGATATCAGgGCCATGTTGGTACCACTGGATCTCGTGGAGCTGTTGGACCGCAAGGCCCACCGGGATCACCAGGCCTCCCTGGAGAATCAGGCCCAAAAGGAGAGATAGGCGCTCCGGGCTCGGCCGGAAAGAAAGGAGCAAGAGGGCTGAGTGGAGCTCCTGGCATCGAAGGGTCACTTGGTTTACCTGGACTCGTGGGAATGAACGGTTACCCAGGGCCGGATGGTCCCCCAGGACTGACTGGCTTACCAGGATTTCCCGGAAAAAAAGGACGACAGGGTCAACAAGGCTTGGTGGGACAAGAGGGACCTGCTGGACGTCCAGGTCCCAGGGGAGAGATTGGACTTCCTGGACCACCTGGAGAAAGAGGCCTGCCTGGTCAGAAGGGAGAACTGGGACTTCCAGGGGACAGGGGAGCCTCGGGAATCAAAGGCATGGAGGGGGCTACAGGTGACCAGGGCAGGAAAGGTGACCAAggacccaaaggacaaccaGGGGAATATGGGGATCTGGGAATAGTTGGCTTACAGGGCTTTCCAGGGCCAATGGGGCCGAATGGTGATTTGGGATTGAGAGGCTTCCCTGGCCCGAAAGGCCCATTGGGCACTCTGGGATTCACTGGACCTGTAGGCCCTGAAGGAATGATGGGCCCAATGGGAAAACCTGGACCAAGGGGTCCGAAGGGAAGCGGTGGTGAAATGGGGCCTCAAGGACCACAGGGAAGTCCAGGACCTAGCGGACCCCCAGGTGCTCCAGGTCCAACAAGGCTGATATATGATGACTCAGCAGTCTACGGTCTATCTGACTCTAACGCTGCCCTCAGCACACAGAGTTTACAGAACACCGAAATGAGCCTCTCCGATCAAAATACGGAGATACTAAAGACTCTACATTACCTGAGCAGTGTGATTGAGAGCATAAAAAAGCCTCTGGGCACAAGGGAGAACCCAGCCCGTGTCTGCAAAGATCTGCTTGACTGTCATCACAAGCTCAGAGATGGTTGGTTCTGGATTGATCCAAACTTGGGCTGTACTTCTGATGCCTTCAAGGTCTTCTGCAATTTTACCGCAGGAGGGCAGACCTGTTTACATCCAGTAGCCTCTAATAAGATGGCGTTTGGTGTGGGGAAAGTCCAAATGAAGTTTCTCCATTTGCTGAGTACTGAGGCCAGTCACAGCATCATACTCCACTGCCTAAATGATCCTCCCTATGGCACCACAGACAGCTTCAGCTCCACCGGATCCTTACCGCAAGAGAACACCACACTTAAGTTTCGTGGCTGGAACAAACAGATGTTTGAGAAAGACACACTACTTGAACCACATGTGCTCCAAGACGAGTGCAAGATCCAAGATGGCAGCTGGCACCAGTCACGCTTCTTCTTCCATACTCAGGACAGTCGTCAGCTACCTATTGTAGACATACAGGAGTTTCTCACATCACAGCCCAATAGTCAGCGCCGTATAGAAGTCAGTCCAGTCTGCTTTCTCTGA

Function

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127840 lncRNA upstream 25290 11651522 ~ 11659072 (+) True G94779
TU127799 lncRNA upstream 107101 11576788 ~ 11577261 (+) True G94747
TU127746 lncRNA upstream 444125 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 489432 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 508145 11176004 ~ 11176217 (+) True G94690
TU127859 lncRNA downstream 34718 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 129698 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 374705 12161638 ~ 12196616 (+) False lrp8
TU127967 lncRNA downstream 524890 12311823 ~ 12358019 (+) False lrp8
TU127958 lncRNA downstream 566740 12353673 ~ 12443080 (+) False lrp8
XM_039812238.1 mRNA upstream 107728 11556357 ~ 11576634 (+) False dnai3
XM_039812237.1 mRNA upstream 107728 11556744 ~ 11576634 (+) True dnai3
XM_039812242.1 mRNA upstream 135264 11525499 ~ 11549098 (+) False LOC120566036
XM_039812243.1 mRNA upstream 135264 11525604 ~ 11549098 (+) False LOC120566036
XM_039812244.1 mRNA upstream 135264 11533108 ~ 11549098 (+) True LOC120566036
XM_039811821.1 mRNA downstream 2202 11789135 ~ 11821809 (+) True znhit6
XM_039810765.1 mRNA downstream 47622 11834555 ~ 11916573 (+) False ddah1
XM_039810764.1 mRNA downstream 52930 11839863 ~ 11916573 (+) True ddah1
XM_039810766.1 mRNA downstream 65070 11852003 ~ 11916573 (+) False ddah1
XM_039812475.1 mRNA downstream 183430 11970363 ~ 11980286 (+) True c9h1orf210
TU127781 other upstream 239829 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 435715 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 736116 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 743118 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1524555 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 1218643 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1386092 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1592465 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2832425 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 3023435 14810368 ~ 14916606 (+) False dennd1b

Expression Profile