RNA id: XM_039812148.1


Basic Information

Item Value
RNA id XM_039812148.1
length 2891
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120565979
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24646870 ~ 24652453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCCGTGGAGATAACTTATTTCCGAACAAGAAGGCGTCCTGTCACAAAATGCTTCCCCTAACAACTATAAGGAAGTTTGTGAACACGGTGTTTTGtcgtattttttaatttatgtttCTGCCATCGCTCAAGTTATAGCTAATCTAAAAATGGATTCCAAGGTTCCTGAAAATAAAGTGTCTCGCCCGTTGAGACGATCGACAAGGCAGTCTTcgggtaacgttaacgttaaagCTTCATTAGTATTGGGTTTTGAAGCGACGCCCAGAGGTCCTCTAAAACGGACCAGAAAGGGGTTAGAAAGCCAAGCACCTTTAACAACTGTCAATGGTTCCAGAGATGTGGAGACTGGCTTAGAGGATGAAGatTCCCCTAGCAAGAAGAGCAGGCTGGAGACTGGAGGAGCAGTGGGCGGCAGTGGTGATAAGAATGACACTGAGATGGATGTCCAGGAATCAGTTGAAGATCTGGAGGAAAATAAAGATGAAGACCAGGAAATGGATATTATACAGGATTCCTCTCCTCTCACTCATCAACCAAAGGTTGAAAGGTGCCAAGTGCTTCATGAATGCTGCAGATCCAGTCATGCTGTACATGAAGATGCAGACTTGATGAAAACCAAGACAGttAAACCATCAACAAAAGCACATGTACCCCCCACCAAGTCTACTGCGCAAATCAGACCACCGGCAAACCGACATGATGTGCCAATCCTTAGCATGGATGACTACAAGAGGACGATGGAGGCCAAAGCCAAGAGCACTGGTATACTGGCAGTTAACCACCATGTCCCAAGCGCGTATCCAACCTCGGAGAAATCCTACACAACCCGACAGCGTGTGAATAACATACCGACTCGAGAAGAAACCGTTCAGCAGAGAAAACAAGGGATGAAGAAAACCAATGTTATCAAGGGAAGCTCTGGATATTCCTGCCCAGGATTCCTGTGGTGTTTATGGCGTTTGGTTCTCCTTGTGTTGCTCTGTTCTGCCGTCTTGCTGGCATACAAAATCATCCCTGTACTCAAAAAGACTGCAGATGGAGGAATGCATCCATCCAGGGCTTTAAAGCCAGAAATGTTTGCAGATCAGTTCTCTCTTCTTGAGACTCAGTTCCCTAGTCAGCGCCCTGAGTTGTGGCAGAGGAGCAAGATCCACCTGGAGAATCATCTCGAAACAGCCCATCCTACAGAGCCAGTGAGTCTGATCTTTACAGCAGGCCAAAGAGCTGAGACCACACTGCGCTGCCTGGCTCAGGGGCTGGCCTCCGCCTTCTCGTCTGCCCTCAACGCCTCCGTCCTCCACATCGATGGAGCCAGCAAAGCCGGCCAGGACAGCGATGAGGTGAAGCTGGAAATTGACGGACAGTTTCGAGCAGCCTTCGACGGAGACAAACCCGTGGCTGTAATTCATCGATTCGAAGAGCTGCCTCCAGGCTCCACCCTTATTTTTTATCGCTACTGCGACCACGAGAACGCCGCCTACAAGCGGGTGTTCTTGTTGTTTACTGTGCTACTGCCTCAAGATGAGGTCAAGGATAATCATAGTCTGAAGGAAGTGGAGGAGATGGTGCAAGAATATCTCAAGGTAAAGCTGGTGGACTCCAGCAACAAAACTGGCTTCAACGAGATGGACACTGACAAGTTCGGTGGACTGTGGAGCCGCATCTCCCATCTTGTCTTACCCGTGGTGTCTGAGAGGGAAGTAGAGCAGAAAGGATGCTGATGAACCAAGCTGGCCATCAAAGAGGATGTCACAATACCGCTTTGGACCAGTCTGATCCTCCTTGGCACTGGGCAGGAGCTCTGAAACCGAGAACATGTAAATACAATGTGCGTGTTGTTACATTTCACATATAGATTTTAGTTCAAATGTTTAAAGGTTGTAATAATCTCTCTCTGTTAGAGATGAGATTGTTCTCATGCTGTCTAATGTTGATGATTTAGCACTGAGTTTTTACACGTGTACATGTACAGGCTTTTGCGTAAGGATGTTACAGTCCCATCATCATTCCACTTCCAAAGTAGGTTATGAAATGCAGATTCTCATGCAGATTTAGTATACTATATACATAGTTGGATTGTACCATAAATCTGTATTGACAGCATGTTGTTCAACAGCTTTTTAATCCATCTAAGAAGAGTTTTTGGTGAAAGATCAGCATGGATTACACTGGGTCCTTCTTTAGAAactaataaaacatgttttattttctgtgggCATCTTTGTTTTAGATGCAAATTCATATTTCTTGTTCTGTATCGAATCTCAACTGATGGCTTCCTTAATATTTCTGTTGAATGTCCCCATGGAGATGTGTGTACCATTGTTCATTTAATTCTCTTGTGTGCGCAATTGCATTTGCACTAAAACTGTATGCTTTAACTATACATCTATACAAGAGTGCTGGCTTTTATTaagaaatattttatattcttagttttttttctgaatgtgtatatttgtgatatgttctctctttccttgattggaatattttttgatagctgtgtatatatattgaatATGAAAAGATTTGTTCTTTGCACCTGATGTCAAGTAACCACTGAAATGTACTTACAATGTTAGAAACATACAGATTTTCACCAAGTGATTTGGATTTGTACAAATTAAATATTACTAAATATTAGTCAGCAAGTCACGTAATGTGCCTTAAACACCCATATGGAGAAGAGACTACTGTATCTTGACAACTTCAAAACCCAAACAAGGTTTCTTGCAGAATATTTTGtgcaaattaatttaaatttcaaaaataCAAGAAAGTTATTTCCTGTGTTCATTCCTTGTGTGTTATTCTGAGATGAATTTTGTTTTGCTCACATGAATATGTGTATATTTTCAATAAAGATTATTTTGATAACTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132146 lncRNA upstream 4785 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 133837 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 281695 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 390789 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 433011 24211860 ~ 24213859 (+) True G97789
TU132243 lncRNA downstream 96575 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 132343 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 134878 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 180984 24833437 ~ 24835517 (+) False G98019
TU132267 lncRNA downstream 180984 24833437 ~ 24835517 (+) False G98019
XM_039811159.1 mRNA upstream 19170 24590326 ~ 24627700 (+) True atf6
XM_039812319.1 mRNA upstream 115282 24524473 ~ 24531588 (+) True LOC120566076
XM_039812321.1 mRNA upstream 115282 24524473 ~ 24531588 (+) False LOC120566076
XM_039812320.1 mRNA upstream 115282 24524493 ~ 24531588 (+) False LOC120566076
XM_039811884.1 mRNA upstream 122512 24520634 ~ 24524358 (+) True LOC120565835
XM_039812155.1 mRNA downstream 15929 24668382 ~ 24684071 (+) True fyco1a
XM_039812156.1 mRNA downstream 15932 24668385 ~ 24684071 (+) False fyco1a
XM_039812157.1 mRNA downstream 16511 24668964 ~ 24684071 (+) False fyco1a
XM_039812158.1 mRNA downstream 39831 24692284 ~ 24709011 (+) True ghrhrl
XM_039812159.1 mRNA downstream 39831 24692284 ~ 24709011 (+) False ghrhrl
TU131697 other upstream 1169052 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1324961 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2070668 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2071722 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2071946 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 129465 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 199848 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 215564 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 880372 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1077805 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile