RNA id: XM_039812156.1


Basic Information

Item Value
RNA id XM_039812156.1
length 6334
RNA type mRNA
GC content 0.47
exon number 18
gene id fyco1a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24668382 ~ 24684071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGACACTTTCAACAAGTTTGTATGCACACCAGGGTTGTTATGGACTTGAGTCATATCTGTAAAAACTGGATGTGACCCTGTGACCCCTGGTTGCCAGGGAGAGAGCCGTGGGGCCATGGCTGCTGGGGCTACGGTCGGGGAGAGCCAACTCCAGAGGATTATCCGAGATCTGCATGAGGCTGTTGCAGAGCTTGCAAAGGAGTACAGGGAAAGTGGGGAGCCAATCACCGATGACAGTACCAACCTGCACAAATTCTCCTACAAACTGGAGTACCTGCTACAGTTTGACCAAAAGGAGAAGACTACATTTCTTGGTACAAAGAAGGATTATTGGGAATACTTCACTGACTGTCTGGCTAAAATCAAAGGAGCCAATGATGGGATCCGCTTTGTCAAATCCATCACTGAGCTGAAGACATCTCTGGGGAAAGGACGAGCGTTTATTCGTTACTCCCTTGTACATCAACGACTGGCTGACACCCTGCAGCAGTGCCTGATGAACCAGAGGGTCACCAGTGACTGGTACTACGCAAGAAGCCCCTTCTTGAAGCCCCACCTTAGTGTTGACATAATCAATCACCTGTACGAACTCAATGAGGTCCAGTTTGATGTGGCTTCCAGAGGGCATGATCTTGATGCCTCCTGGCCCACTTTTGCAAGGAGGACACTGGGAAGTGCAAACTCACCTGGGCACATGTGGAAACCACCCAGTCGCAGTTCCAGTATTAACAGTCTGGCCAGTACCTACTCCCAGCAAGCACATGAGTTCCCCTCGAGCCCCGACTATGGCCATGGTCTGCTGAATGACCTGAATGAgtctctgcctgcctgcacCGAAGACCTTCGCCTGGAGCTGGACCAGTCAGAGCTAAAGCAGCGAGAGCTCCTAGATCAGGTGCAGCAGCTGGCCGAGGAGGCTGCTGAGCTCAGGAGCGTAGTCGTGCAGCTCCAGAGGCAGCTGGATGTCTCCCTTGCTGCCCAAGAGGAGCAACAGGGCTTGCAGGGAGATATCAAAGCTCTGCAGGGAAGAGAAGATGCCCTGTCCAAAGAGGTGGAAGCACTTAGGACTGGGGAAATAGCCAGGGAGGCTGAACTACAACTGTTTCAGGAAAAGTTGGCAGCTGCTGAGGGGAAGAACATAGAGCTCCTGGCCAAGTTGGATGGGGTTCTGAATGAGAAGGGCCAGCAGGCTGCCAATTACTTTGATTCAGCTCAAAAGATACACGACTTGCTGGACAGGTTGAAAGAGGCAGAGAGTGGGAAGATGGAAGCTGTAGCTGAggcagaggagaagaagaggcaggcagagaggCTAGAGGATGAGCTGAGAGTCAAGGAGGCAGCTGTAAAGCATGGTGACACAAAAGTCGAAGCATTAGTTAAATCTGCGTCTGATGAAAAGGCCAAGTTGGAGGCGAAAGTGGAGGAACAGTGCAGTGTTCTTAATGAGCTGCAGGGGACCTTGACAGTGAGAGAAAAGGAGGCGAGCAACCTACAAAGGCAACTGCAAGACCTCCAAATATCTCtagaagagaaggagaaagaggtggaggaggtgaagaGGAGGGCACACCAAGATAAAGATGAAATGCAGAAGAATGCCGGTGGTTTAAAAGAGTCTTTAGAAGCAAAAGTCACTGCCCTTAAGGAGCAGCTAAAGATGAAAGATGCAGAGTTTACCTCCAGCTGCAATACACTACAACAGCTAGAAGCCAAGAACCAAAGCCTCACCACAGAGCGGGACAAACTGACCACTAACCTTATTGAGCTGGAGGGTAACGTTAAAGAACAAGCCAATAAGATAGAAGACTACAAGACGCAATGTGGCAATCTAATGGAACTAAATAAGAAACTGCTGACCACAGTGAAGAGAAAcgaggagctgaagaaggagATGGCAGAACACAGAACAGTGCTTGATGCTGAACTAGCAGCTCTAAGAGCTTCTGAGAAACAGCTTCGCAGCCAGCTGGATGATACCAAGATGACAgtggatgaaaaagagaagcGCTTGCGTGAGGACAACCGCAAGTTGGATGAGAGTCTGCAGCAAGCCACCATGGCCGCGAAGCTCTCAGAGGCCACGTCAAAGCGGCTGGAGCAGGAGAATCAGAGTCTGAGAGAGGAGCAAGACACTGTGAAAGTAGCTCTTAGCCGCATGCAAGCTGACCTGAAGAGTGTTCATGGGCAGATTGGAGAGTTGGAGAAGAACTTGGGAGCCTCACGCAAGAATGAAGCAAGCATTCAAGAACAACTTCAAGCCAAAGAGGCCCAGCTGGAAAGTAAAGAGAAGAACCTTGTTGAGCTCCAGTCCAGATTAAAATCTCTTGAGGCCAGGGAGAAGGAGCTTGAGATTGCCAAAGCTGATGCAGAAGCAACTTGTGCTAAACAGACAGAAATGATTGAAAGGGTTACCTCTGAGAAGCAGGCGATGGAGAAATCTCAGCTGGAGAGGAGCACAGTCCAAGCAAAGGAGAACCAGGAGGTGACAAGCAAACTTGAAGGCCAGCTGGAGGTGTGTATGAAAGAAGTGTCCAGGCTCCAGGCAGAGACCCTGGACCTCAGGGTGCGTCTACAGAGGTCTGAGGAGCAGAAGCTAAAATCAGAAGCACAGCTGGAGGTGACAGAGGCCCAAAGAGATGAGCTTAGGACTCTGACCGAGCATCTTAAAGCCCAGATAGAGGCACTGAATCAAAGGCATGTAACAGAGCTTATGGAGtgcaaaaagaaagaagaggctCTGGTTGAACAGCGTGATAGAGAAGTATCCGCCCATGCCGAGGTGTCTATCTCTGCGGCGGCTGTCCGAGAAGAGCTTTCCACCCTCAAGGCAGAAAATGGCAGGCTAGCCTTAGAGAACAGCGAGATACGTGAGGGTCTACACAGGGCAAACACAGAGATGGCAGAGCTTGGGATGACCATCTGTAAGCTAGGTGCAGAAAAGGAGAAGGCTAGAGAGCATTGGGCAGAGGACGCTGCCAGAATCGAAGAAATGGAGAAAGAGTTAGAGCGACTGGAAGAGAGCATGGCCGAACTACAGCTGGAAAATAACAAACTAAGAGAGGAGCTGACACAGAAGGAGAAACTTCCAGAAACTGTCATGGAGCTACAGGAGCAGCTGAACCAAATGCAGAGCGTCATGGACTCAAGACGAGAGGAGGCGGACGCCGCCAAGTTCCAAATGAGCTCGGAGAACATGAATCATCAGGTCCAGATGAAGAGTGTGAATGAGCAGCTGGACAAGATGAAAGCCCAGCTGCAAGAGGAGCGGAAGAATGTGTCCAGCTTGCAGGCCAAAGTGTCTGAACTCGAGGCTATGAATGAGCAGTACTTGCAGCTAACTGGCGAGAAAGATGCTCACatcacaaagacagaaacaacCATTCGTGAGAGTGAGCGCGAGATTCAGCAACTGAGAGATGCAGTAACCAGTGCTGAAGAAGCACACTCGGCCGTGCAAAAGGTCAGCGAGGAGTTGAAGCAGAAACTCAACGCAAATGAAGCTGCCAGTCAAAACCAGGGCCTGAAGATGACTGCAGAGATCGATGACCTCAACAGAACCAAGACCATCCTTGAAGAGCGGCTCATCGAGCTTATAAGggACAAAGATGCTCTGTGGCAGAAGTCAGACGCTCTGGAGTTTGAGCAGAAACTGCGAGCAGAGGAACGCTGGTGGTTAGTGGATAAGGAGGCCACAAACTGCCTCGGCTGCCAGGGCCAGTTCAGCTGGTGGCTGCGCAGACATCACTGCAGGCTTTGTGGTCGCATCTTCTGCTACTACTGCAGCAACAACTTTGTGATGACCAAGCACAGTGGGAAGAAGGAGCGCTGCTGCAGGGACTGTTACACCCAACATAGCGCGGTGGTGGAGAGGTTCACAGAGGCAGAGCTGAGTCCTTCAGACACTCAGCCTCCTCCACCAGGAGCTGGACCTCAGCCGCCTCCTGAACCGGCCCCGTATATACCCACTCCCAGGGTAACAGTTTCCGACCCTAGCAACAGATCTGACGACGGAGTTTTTGACATAATCACAGAGGAGGAAGTGAACGGCGTCTACGACAGTGACACCATCTCCCAGACCACTGGAGGCTCCCTGGAGGGAGAACAAGACCGACGGCCTCCAGGATCACTGGATATAGGCATAGGAGATTTAACCCCTGATGACCCTGAAGAGCATGTTCCCACTGTTCAGGATTCAGAAATCAACCTTCTCAAATCAGGAGAAGTCACGATGGCTGTCCCTCTCAGCATTGACGACATTTCTCAGTTTGGCGACAGTTCCAGGGAACTCTTCGTCAAGTCCAGCTGTTACAGTGTGATAACCGTTGCCGTGGGTGACTGTGGGCCAACCATCAGCTGGATGTTTTCCTCCGAGCCTAAGAGCATCTCCTTCAGTGTGGTTTACAGGGAATCCACTGACACCCATGTGGAACAGTCAAAGGTCCTGATTTCTCTGACTCGCTGCAATTCCCATAAAGAGACAATTCAAGGACAGCTGAAAGTCCGAAACCCCGGCCTCTATACGCTCATCTTTGACAACTCCTTCTCACGGTTTATCTCCAAGAAAGTCTTCTACCATCTGACCATGGAGAGGCCCATAATCTATGATGGAAGTGACTTCCCCTGAAGCTGGATAACCCACAGAGGTATCAGCATGATGTCACAAAGACCTCATCATGATGTCACTGTGGCAGCTGAAGGGGGAGACTGAAGAGATGGCAAattcattgattgattcatTTGAGGAATTgttttttgctcttttgttCCCAAAACCAGTTTTTACCcaagtattttatgtttttaaaaatgtgtctttattatttaagtCCGTGGTGTTAATGTTTTGTGGCTTGCTTACATTTTAACTGTGGCCTGTAAAGTGTTGTCAACTAGATGAAAAAGGGttttagaaagaaaataagttttatgttgttttttttttttaaatatatacaccAAGTAATATACGTACTTAATTCAGCTAGGTTTAAATAAGTAAGTTGTTCAGTTTGAGAAATTGTGTGATTTTGTTATTTCTTTCAATTTGTTTTCAGTCTTAGTTTTGCTTTGGCCTCTCTTTTCTCAAATATGCTGTTACTTTAGGGAATTGAGATCACTTCAAGTAACCAAGCAGTATGAAATATGATAAAAGACTGTATTTATTTGCAAAATCTGTCAATGAAGACCCAGGAAAGATTTTAAAAATTTACAGAATGGTGGTCAGTTGAAAGCTTCTGTAGCAGAAAAGTGCAGACAGGTTGTTTGTTTGGCTTGTTCATTAATTGTCTGAATGCTATGTTTGCAATTTGTCAGCGCAGGAAGGAAAAAAGCGGCAACTAGTAAATGGCCTGTAAAAATACACTTTGCGTTTGATGACAAAGCATGTGAACTTTGTGCAAATCTCAGGAGTGGGACATAAAATTGTCCTCCAGTGGTagcatgaaaaagaaaatctttctGTGCAAGGAGACAAACAGACCAGCTCTCTCCATCCAGTTTACAGGATCTAATGAAGCAGAGTGCCTGTACCATACACAGGCCGACTTGTGTCATTACAATGACATTCACTTAAAGTATATTAATGACTATACTTTCAAAGTGCCTATTAACTCTGATTGCCAGGGATTAGTTTGCTTTTGTGTCCGTATATTGTACCCTTTGTTATCTGCACAGAACGTGACATTTGATACTATTCTGTAAAAACGTAATTCCAAATCACAATCTACACAGtataaaaatgtttaagttTTTTCAGTTGAAATGATTTTTCAGTTTGGATTTCATTTGAATCTCTGGACTCTTTTTGTAATATGTTTAGAAAACCGTTTGCACTGTGCTGTCAGTGATCAAATAGGTTTCAGTATTGTGTGCTgttcattgttggtttttacTATTCTAGCAAAGCAATAAGGAAAAACGGGCTTGCTCACTTTTGGACACAACCATACACTACTTAATGAAGCAAGGGCGTATCTCTATGCTGCTTTTATAGAGATCTGTTTGCACTTCACAGTCAGATCTCTTATATTTTTGATGGGTGTAAATTGCTGCAATTTCTATGCAAAGGCTCATATTTTCTCTACAGAGCTGCACTTTGTGATAATTGTTTAATAAATTGTTATAAGCATTATTAAATCTGTTAAGTTTACATTATCTTTGTCAAAGTGTTCCCACAGGGACAGATTTATCTACTTGCTGTTTTTAAAGGATAATTTTGAAGGAGTAGAATGTGCATGTGTCATCGCTGCAAGCACTCAGTGTATCTAGTAATGGACCTGTCAAACCCCCAGTAAACACGAATAAAACATGAGAGTAATAATGCCTCCGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132146 lncRNA upstream 26300 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 155352 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 303210 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 412304 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 454526 24211860 ~ 24213859 (+) True G97789
TU132243 lncRNA downstream 64957 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 100725 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 103260 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 149366 24833437 ~ 24835517 (+) False G98019
TU132267 lncRNA downstream 149366 24833437 ~ 24835517 (+) False G98019
XM_039812148.1 mRNA upstream 15932 24646870 ~ 24652453 (+) False LOC120565979
XM_039812147.1 mRNA upstream 15932 24646871 ~ 24652453 (+) True LOC120565979
XM_039812149.1 mRNA upstream 15932 24646871 ~ 24652453 (+) False LOC120565979
XM_039811159.1 mRNA upstream 40685 24590326 ~ 24627700 (+) True atf6
XM_039812320.1 mRNA upstream 136797 24524493 ~ 24531588 (+) False LOC120566076
XM_039812158.1 mRNA downstream 8213 24692284 ~ 24709011 (+) True ghrhrl
XM_039812159.1 mRNA downstream 8213 24692284 ~ 24709011 (+) False ghrhrl
XM_039812160.1 mRNA downstream 26456 24710527 ~ 24722098 (+) False si:ch211-221n20.8
XM_039812161.1 mRNA downstream 26456 24710527 ~ 24722098 (+) False si:ch211-221n20.8
XM_039812162.1 mRNA downstream 26457 24710528 ~ 24722097 (+) False si:ch211-221n20.8
TU131697 other upstream 1190567 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1346476 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2092183 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2093237 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2093461 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 97847 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 168230 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 183946 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 848754 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1046187 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile