RNA id: XM_039812159.1


Basic Information

Item Value
RNA id XM_039812159.1
length 2704
RNA type mRNA
GC content 0.43
exon number 13
gene id ghrhrl
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24692284 ~ 24709011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTCCTGTAGGAGCGTGTTGCAGTCTCATTGAAGAAGCGCCACGTTGGGCTGAACGGAGGAGCCGACAACATGTCCTGTCTCTACATCAGAGGGATCTTTCTTTGTTGGGCTTCAGCTGCTTTGTCGAGCCTGCACCCTGAATGCGAGTACATATTTCAGCTGGAGAAAGAGGAGCGTCACTGCCTTCAGTACATTGCAGAGCAGGGCAACAGAACCACAGAAGGTTGTCGGCCATTCTGGGATGCGGTTGCCTGCTGGCCTCATGCAGAAGTTGGGGAAACAGTCCAAAGAGCTTGTCCTGCCATCTTCTCCCTCTTCAGAAACAACACAGGTTCAGTGAGCCGTAACTGCACCAGTGGAGGTTGGTCCAGACATTTCCCACCGTACCACATCGCCTGCAGTGTGGATGATGACATTCCTGAGACAGAGCAGATATACTTTGCCACAGTGAAGCTGATATACACCGTCGGCTACAGCATCTCTCTAGTGGTGCTGGCTGTAGCTGTATTCATCCTGTTGCTCTTCAGGAGGCTGCGTTGTGCCAGGAACTTCATTCACATCCAGCTCTTCATCACATTTATCCTGAAAGCTGTGGCGGTGTTCATAAAGGATGCAACTCTGTTCTCGAGTGACGACACCAACCACTGCACCCTTTCCACATTTGCCTGTAAGGCCTCTGTGGTCTTCTGTCACTACTGTGTGATGTCCAATTTTTTCTGGCTCCTGGTGGAGGCGCTCTACCTCAATTCCCTGCTGCTTTCGTCCTTTAATCACAGCCGTCGGTGCCTCTGGGGCTTCAGCCTGCTGGGATGGGGTGTACCTGTGCTCTTCACTGTCCTGTGGATTGGATCCAGGGTGTATTTTGAGGACACAGAATGTTGGGACATCAACGAGGACTCGCCCTATTGGTGGATCATCAAGGGACCAATTGTTGTGTCTATAGCGGTCAATTTTATACTCTTCATGAACATCATCAGAATCCTGATACAGAAGCTCAATCCTCGGCTGATCCACTTCAATAACTCCTCTCAGTACAGACGCCTGACTAAGtccaccctcctcctcatccctttGTTTGGTACTCACTACATGGTCTTCAATTTTCTGCCTGACTACTTCAATGTTAACCTGCGCCTCTGTATCGAGCTCTGCATGGGATCCttccagGGGCTTCTTGTAGCGATTCTCTATTGCTTTCTTAATCAAGAGGTCCAAAAAGAGGTCCACATGCAGTGGCTGAGGTGGCAGGGCCGAAGCTATGGTGTGGTGTCACCTGCTGCGAAATGCAGCCAGATGGACACACCTTTCTAGGGGTGGCCTTCCCCCTCATCTTACAGGTCTTCTGTTAATTGGACATCGGCTAAGGATTGCTTCTGTGCACGTCATCGTCTCCAATGGGCTGCACAGTACGCCCAATACCAGTGGTTGTCGGCCACATCTGTAAGTTTTCATTCCAAACACGATAATAGACTTTTTACTAGCTGCGCTCCTTTTGCCAGAATTGGAGGAACTAAGGTGAACTTACCAATGGAAAATGATTCTGAAACCTCATGACATTTTACTGACACATTTCAAGACAGATCCTACCAATTTCATATGCATTTCCCTTGTGGCAACAACTTTAGAAAGATCAGCTTCAAGCTTTCCTTGGAGACCTTGCATGTCAAATTAATTAATATGCTCATTTTCTGATTCATTCTGTCTGAAATGTTCTGTTTTAGCGCCTCTGTCTTCAAGCCCACATCACTTTTTTATAATATGGGATGTTAAAGAGTTGAGATGAGATGCTAAAGTAAGTATATTCAAAATTTGATTCCATATATCACAGATGCTATAGCTTAGCATGTTGAACATGTGAAGCTGTAGCCTACTGCCAAGTGACACACAAATTAATCATCATTCATTTAATtctttgtatatttatgtatgggtttgctaatttatttattaattcacagtctgtgtttacagtaagaataaaaataaataccttAATTGCAACTTAATAGATGAATACCTTGAAGTCACACTTTGGCATTAGCTGCTAAAGTGTTGTGGTTTTTTTGAAGTGTAAACCTGCACCTGCACACTGCTGAGAGCCACTTCACTGTATGTatacttgtgtgttgtgttccgTCATGTCATGTGTTCGACTCCACCAATATGAAAGACATCTCCACTGCCATCGGTGATCCAGCAAAGGACGGGAAAACATGAATGGAAACTTTATCATAGTAATAATTCAAAATGATTTGACATCAATATATATGATGCTAACGTATTGTACAGTACTTTGAACTGCATGGTCATATAAAGAAGGATAAAACTGGATTCCCATAATTACCGAATTTGCGTTAGATCTATGTTTGTGAGAAATTTagatttttgtctttgtttgtatTCTCTATGTGTTATAAGGTgataagatttatttttttaatcaagaaaAAAGGTCATGCAAAGTATTGAATCACTACCCAGTTCTGCAGCATCCACAATCCTCTTCATGTAAACAAATGGTTTGCCTAAAACTGAATGTATAAACAAGTCAACTGTCAGACTTGTTTTATAGTCACTTTTCTCTGTTGTTACATTTGGATGTTGCTGCTTTTCTTGTGCCTCTCTCTGTGATGTTTTACTgccttgtgaaaaaaaaaaaatgattcctGCAAGTTCAAGTATTAAATGTTTACTCAGCTTCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132146 lncRNA upstream 50199 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 179251 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 327109 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 436203 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 478425 24211860 ~ 24213859 (+) True G97789
TU132243 lncRNA downstream 40017 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 75785 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 78320 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 124426 24833437 ~ 24835517 (+) False G98019
TU132267 lncRNA downstream 124426 24833437 ~ 24835517 (+) False G98019
XM_039812155.1 mRNA upstream 8213 24668382 ~ 24684071 (+) True fyco1a
XM_039812156.1 mRNA upstream 8213 24668385 ~ 24684071 (+) False fyco1a
XM_039812157.1 mRNA upstream 8213 24668964 ~ 24684071 (+) False fyco1a
XM_039812147.1 mRNA upstream 39831 24646871 ~ 24652453 (+) True LOC120565979
XM_039812160.1 mRNA downstream 1516 24710527 ~ 24722098 (+) False si:ch211-221n20.8
XM_039812161.1 mRNA downstream 1516 24710527 ~ 24722098 (+) False si:ch211-221n20.8
XM_039812162.1 mRNA downstream 1517 24710528 ~ 24722097 (+) False si:ch211-221n20.8
XM_039812163.1 mRNA downstream 2656 24711667 ~ 24722097 (+) True si:ch211-221n20.8
XM_039812166.1 mRNA downstream 19785 24728796 ~ 24733159 (+) False LOC120565988
TU131697 other upstream 1214466 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1370375 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2116082 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2117136 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2117360 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 72907 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 143290 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 159006 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 823814 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1021247 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile