RNA id: XM_039812170.1


Basic Information

Item Value
RNA id XM_039812170.1
length 3313
RNA type mRNA
GC content 0.44
exon number 11
gene id atg4c
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12512606 ~ 12522434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGACTTGACTCTTCTACTTCCTTAAAGTGTAAACATTGGAGACCTCAGGGCATTGAAGTTAACGTTAAGCCATGGGCCGTGCACCGTGTTAAATTATCGGTATTCTAACAATATACCGCGTTGTGAAGTTTGCACGTAGCTGCAAAGCGTCTGGAAAAGCTGGATCGAAGAAGAAGCTCGAAGggtgtgtgtgctgtgtgggaATGGGTTACATTCCTTGCTGGTCCAAATGCAGAATAAAGGGAGCGACGAGGTGGAAACATTGAAGACAAAGTTCTTGTCTGTGTGGCACAATGTGAAGTACAGTTGGGCTCTCAAATCAAAGACTTCATTCAGTAGAAATTCCCCAGTGTTTCTCCTTggaaaatgttaccactttaaaGCTGAAGATGACGACGGTGTTACAGAAACCTGCTTCGAAGCCTCTGGTGAGGATTTCGTCATGGGGAACGCGGAGGCTTTCCGCAGGGATTTTGCATCCCGAGTGTGGCTCACCTACAGGGTGGAGTTGCCTCCTCTGCCCAGCTCCACCTTGACCTCCGACTGCGGCTGGGGCTGCATGCTGAGAGCCGGGCAGATGATGCTGGCTCAGGCACTTATTCTGCACTTCCTGGGCAGAGACTGGACCTGGTCGGAGGCGATGACGCTCCAGCCTTTAGACACAGAGACGTGGACTACCACTGCAGCCAAGCGTCTTGTCGCCTCTCTGGAGGCCTCTCTGCAAGGTTCCCCCAGGCCCTCCGATGATGGCTCACCACCCATGCACCAAGCCCAGGCACCGGGATGTGCAGAAGAGGCAGATGCACATTTGAAAGAGATGTACCACCGCACTCTGGTGTCCTGGTTTGGGGACAGCCCCTTGGCTCAGTTAGGCCTCCACAGTCTGGTCCGCATGGGTCTGACAATGGGGAAACAGGCAGGGGACTGGTATGGGCCTGCTGTAGTGGCTCACATCCTCAAgAAAGCCGTCGAGGAGGCGATGGACCCTGGCTTGGCGGGTATAACTGCTTATGTCTCCCAGGACTGCACAGTGTACAATGCCGATGTCATCGATAGCCACAGGGCACCAAGAGCAGGGCAGACCTCTGCTGAGAGATCCGATGCCCCTCCTTCCCCACACAGTGACCAAGCAACGTCTGCCTCCACCCTGTCTGACAGCCGAGCCGTCATCATCCTCATCCCTGTGCGGCTGGGAGGGGAGAAGACAAACCCTGACTATTTCAACTTTGCCAAGAGCATACTGAGTCTGGAGTACTGCATAGGCATCATCGGGGGGAAGCCCAAACAGGCCTGCTACTTTGTAGGATTTCAAGATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACCAGCGATTTCCCTCTCCAGTCATATCATTGCCCGTCACCAAAGAAGATGCCTTTCAGCAAGATGGACCCAAGCTGCACCATAGGTTTCTACTCTAGAAGTGCTCAAGACTATGAGAGAATCAGTCAAGAGCTGTCTAAGGTGCTGCAGCCGTCAGCGAGGGAGAAATACCCTGCGTTCACTATCGTGCAAGGTCATAGCAGAGATTACGACCTGTCTGCAGGCGTGACCCCGGAGAAGAGAGAATGGCCCTTCATCCGTGACCCGCGGAGGACGGTCACCACTGCCGGAGACTTTGTGCTGCTTTGACAGCGCTGTTTAAAAGACTACTGACAGGAAAGTTCTTCTGAATCAAACTGCTTGATATCTAAAGCCTAAGTGTCTTAAGTCTGTTTGACACTGATGGTTATGGAACTCTATACAACTACAGTAACTCAGTTTATAAATCCTGGAAACTTTGTTGCTAAGCAATATTTGCCAAAACTGTTATTAACTGGTTGGTCTTGTGTTTGTTAGCTGGAAATTGTACCTTGCTGAACATTTAGTCAGGAAGCTTTTGGTGCTCTGCCTAATTTAATGAACCTAAAatgtttggtaacactttacttgaatgTATCTACATacgagtgacatgacactgaaccctaaccataactctaaccctaaccataacttgtcatgacaaaaaccccaaatgacacttactaaaagaagcgttatgtcagaaacgtttatgacttgtttataatgtttatgacacgttcatgaccgtgtcatgtcactcttatgtagatacgtTCAGGTAAACCAAATGTTTATACTCGTCTAGGGAAGGGAACATCCACGGGGACattatttgtgatttttttatggATAAGCTATTGATAgatgtcagatttttttttatttttttttattttgcacctTACATCCAGTGAAGAAGTCTCAAAGGGATCTGCTTATAATGATCATAAGGTCCAGTTCAGCACTCTCACGTCAACATGCTTACAAGGCTATCCGTGTCATAGTAACCATGACTAAAATCAGTGTTGGCCCACTTTAAAATCTTTTCAGAGGGCTACACCTACAGTAGTTAGACTGTGTGGTTAGCACTGGGATTAGAGAAGTATTATAAAGCCTTAATTAATATGGTCCAagggctttttctttttttaaatgtagccaAGTAACTTTTCCAAACTTCTCTGCCAAAAACATTTCCTCAAACAAGAGGAGACTTTCTTTATAGTTCTGCCAACATTTTTTTCCTATTCACACTAGAGCTAATTTCTTTGTCTAAGCAATAATATGATGGTCTTGTATGATTGATATTTGCTTGCCTTAGTGTATTTTGAGTGGTATTAATTTTTACTGAGTTATGCATCACCGTGCAAGTGCACCAGTGGTGACAGCAGAGTTTGTCAAAGGGATACTGCCATGTGCTATACCTCACCAAGAACTGTCTGTTATGAATTACCctttacaatatattttttttagatgtaaAAGTATTTACTGTATTCGTCTAACACACACTgaagtaaaaacataaaaaacactcCTAAGTCAGATTCAGGGAATTACAATATACAGTAAAGTTGAATTTGTTTGGAGTAGCAATCTACaccacatacagacatataaaCCTTCCtatatcaatattctttttatATGCTGTGTGTGATTTAATCATTTCGAACCATCTTAACAAAATAGAAGTGGAGAAGTACGCCAGAACACGTTACGTTACAAAACTTGATCATGCACTTTGATTTATCACTTCAAGTATTCCGACTGTTGAACTCCGACAAATGCTTTCCTGCATTACAACACGCTGCATGTCTGTTTGCATTAATTAACTTACAAAATGTatcataaaatgtaaaatgtttttaacacTGCCATgcaaaaaagttgaataaagtcaaaatattAAAACTTT

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127958 lncRNA upstream 69536 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 70755 12353673 ~ 12441861 (+) False lrp8
TU127967 lncRNA upstream 154597 12311823 ~ 12358019 (+) False lrp8
TU127963 lncRNA upstream 316000 12161638 ~ 12196616 (+) False lrp8
TU127883 lncRNA upstream 592579 11916631 ~ 11920037 (+) True G94813
TU128119 lncRNA downstream 342581 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 343478 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 472801 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 576353 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 585255 13107689 ~ 13112320 (+) True G95027
XM_039810642.1 mRNA upstream 13569 12494754 ~ 12499047 (+) True angptl3
XM_039812104.1 mRNA upstream 53471 12450052 ~ 12459145 (+) True usp1
XM_039812105.1 mRNA upstream 53471 12450052 ~ 12459145 (+) False usp1
XM_039810699.1 mRNA upstream 159002 12169511 ~ 12353614 (+) False lrp8
XM_039810268.1 mRNA downstream 139485 12661919 ~ 12663893 (+) True foxd3
XM_039811305.1 mRNA downstream 147787 12670221 ~ 12690258 (+) True alg6
XM_039811306.1 mRNA downstream 147947 12670381 ~ 12690258 (+) False alg6
XM_039811307.1 mRNA downstream 180710 12703144 ~ 12717685 (+) True efcab7
XM_039811826.1 mRNA downstream 197657 12720091 ~ 12730969 (+) True pgm1
TU127781 other upstream 1068083 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1263969 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1564370 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1571372 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2352809 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 483142 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 650591 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 856964 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2096924 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2287934 14810368 ~ 14916606 (+) False dennd1b

Expression Profile