RNA id: XM_039812172.1


Basic Information

Item Value
RNA id XM_039812172.1
length 6163
RNA type mRNA
GC content 0.42
exon number 2
gene id lrrc8db
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29763669 ~ 29772684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTTTCATGTACATCTTTTTTGGTATAACAAAACAAAGCTGTGTATGTAACTTTAAATTACACCCTTTTCACTTTTACGACGGTCCCTAACTTCAGTGGGTCATCTCTCCTACTTTCAATCCTTGCAGGCTTTAAGCTATGTGAAACATATCCTGTGCTACATCAGGAGATATTTATCTACATATATTTACTACAGAACCGTTGCCAATTGATGGTCATGGTGTAACGTAGGCTATAGCAACCTCGGTGAGTGTGGGTAACGTTACACTTCCAGCAGTTGGTGCTGCCGTGCCCGGCTGTACCGCCAGCCACCGGGGGACCCGAGCATCTGAAGCGGAGTGGGGGTAGTCAGCTAAGCTGCTTACAGCCCGGCCAGCAGGCCCACAGTTCAACTGATGCGAAGAAGGGACGGCTTTATCACCGCAGCGAAACATGGCATATAAAGAGAGGTGTTGTTCGGTATTGCTGGCATCGAAATAACTGGATCAGACATCCTGAAGgaatgtTCAGCCTCACAGAAGTAGCCTCCCTGAATGACATCCAGCCGACTTATCGAATACTGAAACCATGGTGGGATGTCTTCATGGATTATCTTGGTATTGTCATGTTGATGTTGGCCATATTTTCTGGAACGATGCAGTTAACTAAGGACCAAGTGGTTTGTCTTCCCATTATGGAACAAACTCCAGAGGGGGCTGGGGGCTTTTTAGGACCCCAACCCCCAGAGATAGTTGATAGTTTATGGAACAAAGAAAGCGCCGTTGGAGAGCAAGCCGCTCCTTTAATGGCTAGAAGGCCTCCTGATAGCATCGCCCCTACAGTTCACTTCACGCAGTCGGGTACTCTTGGGCAGCCTCAGCCTACAGGTGTCAGGACTAAGCTGGATTTTCAGCAGTATGTTTTTGTCAATCAGATGTGCTACCATGTTGCCCTTCCTTGGTATTCCAAATATTTCCCATACCTGGCTCTAATTCACACCATTGTATTAATGGTCAGTAGCAACTTCTGGTTCAAGTACCCAAAGACAAGTTCCAAAATAGAACATTTTGTTTCGATACTGGGAAAATGTTTCGAATCGCCTTGGACTACCAAAGCACTGTCCGAGACTGCCTGCGAGGACTCGGAGGAGAATAAGCAGAGACTGGCTGGGGCCTCCTCCCTCCTGAAGcatctgtcaacatgcagcgaGGAGGGGAGTCCAAATCAGTCCGCCCCAATGCTGACTAAACCTGGGCTCACGTTTTCTGCTGAAAAGCTTGTGAGTGAAGTTCCCGCCATGACCATTCTGGACAAGAAAGATGGTGAGCAAGCAAAAGCCCTGTTTGAAAAAGTCCGGAAATTCCGTGCCCATGTGGAAGACAGTGACTTGATTTACAGGCTGTATGCCATTCAGACAGTCATCAAAACAGTTAAGTTCATTTTGATCCTCTGCTACACGATGACTTTTGTTGCCTCTATAGAATTTGACCATGTGTGTGAGCCTGAAATAAAGCATTTGACTGGATACACAAAGTTCCACTGTACACACAACATGGCGTTCATGTTAAAGAAACTCCTTGTTAGTTATATTGCTCTTATATGCGTTTATGGCATAATCTGTATATACACACTGTTCTGGCTTTTTCGGAGACCACTTAAGGAGTATTCCTTTGAAAAAGTCAGAGAGGAGAGCAGCTTCAGTGATATTCCAGATGTTAAGAATGACTTTGCATTCCTCCTCCACATGGTCGATCAGTATGACCAGCTGTATTCAAAGCGTTTTGGTGTTTTTCTCTCTGAGGTGAGTGAGAACAAACTTCGGGAGATCAGCCTGAACCATGAGTGGACCTTTGAGAAGTTGCGGCAGCATGTGACGCGTAATTCTCAAGAAAAGTTGGAACTCCATCTTTTTATGCTCTCCGGGATGCCAGATGCTGTGTTTGATCTCACTGATTTGGAAATCCTTAAACTAGAATTAATCCCAGAGGCCAGGATAACAGCTAAAATCTCACAAATGATAAACCTCCAGGAGCTGCACTTGTATCACTGTCCAGCCAAAGTTGAACAGACTGCTTTCATTTTTCTGCGTGATCATCTCCGGTGCCTTCATGTCAAATTCACAGATGTTGCTGAGATTCCAAGCTGGGTATACTTGTTGAAAAATTTAAGGGAACTGTACTTGGTTGGTAACCTGAActctgaaaacaacaaaatgatcGGACTCGAGTCTCTGCGAGACCTCAGGCACTTAAATATTCTGCATCTCAAAAGCAACCTAACAAAGATCCCGACAAACATAACGGATCTGTCTCCACATCTGATCAAGTTGGTCATTCATAATGATGGTACAAAGCTCTTAGTGCTGAATAGTTTGAAGAAAATAATGAATCTCGCCGAACTGGAGCTTCTTAACTGTGAGCTGGAGCGAATCCCCCATGCCATTTTCAGTTTGAACAACCTTCAGGAACTTGATCTAAAATCCAACAACATTCGTACCATTGAGGAGATCATCAGCTTCCAGCACCTTAAGCGACTGACGTGCCTCAAACTTTGGCACAATAAAATCATCTCCATTCCATTGTCAATTAGCCATGTCAAAAACCTTGAGTCGCTCTATCTCTCACACAACAAGCTTGAGTCTCTACCCTCATCGTTATTCACCCTTCCCAAGTTGAGGTACCTCGATGTTAGCCACAACTCTATAGTGGTAATACCACTGGAGGCTGGCTTTCTGCAGAACCTCCAACATTTTGCCATTACCGGCAACAAAGTCGAGGTAGTTCCTAAGCAACTGTTCAAATGCAACAAACTGAGGACCTTATGTCTCGGTCACAACTGTATCTCTTCCATTCCAGAGAAAATTGGCCAACTGTCACAGCTGACACATTTGGAACTGAAGGGAAACTGTCTGGATCGTCTCCCGGCTCAGCTTGGTCAATGCAGCCTCCTGCACAGGAGCTGCCTGATTGTGGAGGATCATCTCTTTGACACGCTCCCCATGGAGGCAAAAGAGAGCATTAATCAGGAATCTAGTGCTTCTTTTCCAAATGGGTGTAAATGTCTAAGTGATGGACGGTAGTCACATCCTACGTGGCATAAAATGTCTGGCATTTCATCTTGGGTGTAAATAAGTCTTTTAAAAATTTGAAACTGTATTTACATGGTACAGTACTGGTGCACTTCATGATGTATTGGTAACTTATGAAATGAACATACCACAACACATACAAGGTCGGTACAACTGGAGAAATTTAGAGGAACTCTAGGATTGATCATGGCTGGTGTCATGTCTACAGTGGATCTATGGACATTTCTATCCTTTTGAAACAACCCTCCTTTTTATCTTTGTGATTTAAATTAATTGTATTTACATTAACTAGATACACCTAATTGACCTCAACTTAAAAGGGACAGTTTActcaaattacaaaaacacCTTTCCCGTAATGGTATCTAACCATGCAGTTAGTTCAGAAATTTCTGCCTCCACCCAAATAAAATTGATCTTAGTAGATTTTGGTCTGCACCTCACGGCAACAGGATATCatgtttgaaatgattcaaCAGCATTATTTCTACATTTTATCAAATATTCTTAGTGAAACCTGTTTACAGCAAGTTTGTTGATTATCCAGAGTGACTGGGTCATTCTGGAAGAAGATGTTGCTGTTGAAATGTTCAAGGATGCACAAAATGCCATTCCCCTCAATTGAATTGGGATGGAGGCAAGAAATCTTAAGTACGGATATTTCAAAACTTGAGGATGATGGCGAGATATAGTAAGCAAATATGTTTCTATGTTATCAAATATGTTGTTTCTGTTCTGttatttgggtgaactgaccccttaaaaaaaaaaaattctactcAAGATCCAATTGCCAGCTTCGCAATTTGGTGATATCAGACCGTCCTCTCAAAGAAAGCCGTATAGGTAGATTGTGCAAGCAGCCTATTATGACCCatatttatgttatgtttatgtCTAGTGGCTATAGTAATCATGGTGGGAGTAAAGGCGAAAATCAGGTGATGTAGTCTAAAAGCCAATTTGTGCTTCTACGTTAAATCAACGCTGTAGCTACGTACGTAGATACCGaccctacgccggaccctacgccgtagcctgacgtgcacctctcaaaaaatgtaacttcacTGTGACGCTCCGCCGcagcttggtagcgttgcatttctgtctactcatttcctggttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctacagatttccgactgtggtcagaaagcacacgGGGAGACACTTTGTGTCTCCCACTATGCCTCTAGAGTCGCCACTCGCTCTGAAGCTTATCGCGTCCCTCTCTCACTGGCTCTACCACACGCTCCCCACACACATGCCAGCcctaaagagatcgacgcacacaccaatgcACAAGTATAAaattcaggccacttacgtaggctacggcgaaagctctgcttggagcctccgcacaaccataaatcaagcttaagAGTGCCAAAgtgggttggggtggtggatgggtcaaacaaacccAGGACTCTCACCCAGGAGACAGCTGTTTGTGTGCCACgggaaaccaaaagtcaatgtTGACTTTCTTTAGGTAAACCAACTTTGTTACGGATTTACCCAatccatgatcttttcctaaccctaaccaagtagttttttgCCTAAACTTACCCAAGCAGttccgtttcacaacgttaaacaCGTGTTTACAACTACGACCGTTTCGCAACATTAAATAGAGCTGTCACGTGTTATGGTCACACGATCAAAACTGCCACCCTTGTCTAGGTTAGTGCTGCTGTCAGTGCCCTATGACCAAAAGGCACAGGTAAAAAGACTGGAGGTGGTCCCCGGGTGCCTGTTGCTGCCAACTGCTCCTGTATTGACACATTTAATTTCTCTGTGAATGATAAGAAAAGCACCTTTAAACTTTGAGCACCTTTTAAACAATGACATATGCTgcataaacaaattaaagaacTGTGTAGGTATAACCTAGTATTATTAACCTTATGCACTCTGATTTGAATATACCTTGTACTTTTACGCACCAACATGATGAGGTTCCCATCCAAACCTTGTCACTACTTCTTGAAAAGTCTTGATTCATGTTCATTATCACTCAGCGGTATCATTATTTTTGATACAGTTGATTTTTTCAAAGGAATAGATAGTACattgtttccttttttgtgtACAGCCAACCCACAAGTATGTTTTTTAGTTGTACTTTTGCTCACAATTGTTTTATTCTTGTAAACACTGTATTTTCCATGCATTTTGtgtgtaatttgtatgtatatattatctCATTGACTTTTATCTGTTCTTCTCTTTACACAGCACTTTGTGAACCTGGTTTTAAAATGTGCTAAATGAATCAAAAGCTGCTTTTGCACCAAGAGCATATTTGGAGGTTGTACAGTTAAATCTTGATGCCTGAAATACCCGCCAtttatgtttaaattaatttatcCATTGTTAAACAACAGTGTACATACAATACAATCTTCTTACTTAGTGTTGTTACTGCTTAGAAACACATCACAACTAGGAAACAGGGTTAAGAATGGGGTTTCTAAACATTTTGACCAATATACACAttacattcagtgtttttttcagaactgattacatttttacaatttGGTATACAAGTTTGTATTCCAAAAATGACAGATTTGAACAGCTAAACATGCAAATCACTGAATTGTCTCCTGCTGtttggtaaaaataaaatacatgaagCAGTATAAGACACAGTGCTCCTATACTTCACTTCACCAGTTCATTCAACATACTGCTTATGaatgacatatttttttttttttaacataggtgtatgaTAACTAGGCCATAGttacagtatttcacaaaaTACAAACTATATTCAATTATATATTCAATTCTTCTTTCTTActgatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaaaaggcagATAGTTGTTTGCATATGAACATTGTGAGGCAAATCAACACATTTCACtcaaataaatatgaatgaCTAAAAATAA

Function

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133966 lncRNA upstream 3303 29760043 ~ 29760366 (+) True G99327
TU133931 lncRNA upstream 67736 29695607 ~ 29695933 (+) True G99299
TU133924 lncRNA upstream 170046 29593365 ~ 29593623 (+) True G99292
TU133892 lncRNA upstream 324947 29438162 ~ 29438722 (+) True G99261
TU133866 lncRNA upstream 606562 29156684 ~ 29157107 (+) True G99238
TU133968 lncRNA downstream 1633 29774317 ~ 29775080 (+) True G99329
TU133977 lncRNA downstream 105188 29877872 ~ 29878121 (+) True G99338
TU134001 lncRNA downstream 267158 30039842 ~ 30040895 (+) True G99356
TU134013 lncRNA downstream 413023 30185707 ~ 30191840 (+) True G99368
TU134037 lncRNA downstream 438799 30211483 ~ 30345174 (+) True G99379
XM_039811912.1 mRNA upstream 8260 29742393 ~ 29755409 (+) True lrrc8c
XM_039812314.1 mRNA upstream 327173 29422379 ~ 29436496 (+) True lmo4b
XM_039812235.1 mRNA upstream 390203 29352402 ~ 29373466 (+) False hs2st1b
XM_039812234.1 mRNA upstream 390203 29352403 ~ 29373466 (+) True hs2st1b
XM_039812006.1 mRNA upstream 431891 29326517 ~ 29331778 (+) True LOC120565897
XM_039812340.1 mRNA downstream 428848 30201532 ~ 30244918 (+) False brdt
XM_039812341.1 mRNA downstream 429467 30202151 ~ 30244918 (+) False brdt
XM_039812338.1 mRNA downstream 429521 30202205 ~ 30244918 (+) True brdt
XM_039812337.1 mRNA downstream 429521 30202205 ~ 30244918 (+) False brdt
XM_039812342.1 mRNA downstream 429521 30202205 ~ 30244918 (+) False brdt
TU133929 other upstream 98579 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 989159 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 1617344 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 1679282 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2967930 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 654819 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1037834 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1850014 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1857132 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1860881 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile