RNA id: XM_039812196.1


Basic Information

Item Value
RNA id XM_039812196.1
length 2055
RNA type mRNA
GC content 0.54
exon number 6
gene id zmat3
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10493529 ~ 10503066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TagcattttatttcattgtatttGCCTATAGGCTATTAACTCATAGGCTATTAACAACATTATCATCACAATAGCAGCCTGGCTGTTTTCACTGCAGATTTGAGACTCATAGCCAGCCACGGGTGATCAGGGTCTACCACATAGGTGTAACATGTACACAATGTGTCATGATTGAAAACCATGCTGTTCAGCAGCGGTGGCATCGGAAATGGACTGTACCAACAAGGAGAGGGATGCTGGAGGATCCTCGGCaggacaaaaatgtaatttcgcGAGGGAAACATGTTTTTTGGTACTTAATGTGAAAATACTAACGCAATGTGTTTACATGTTGGCCATTTAAAACGTATTTTTGCTGGCTGGCGATTTCTGTATTTCGCTCTCATCTTTGAATCACCCCTCCGGTGAAAGCCTTAGTGTCTGAGCGTGTGCTAGGTACTGTCATCCTGCCTGACCGCCAGGTTTTTTGGAGAGAAGAAGTTGGAAAAGGGATGTGGCTGCGATGATGGCGCTGCAGCTGAAGAACGGGGATGCAGCGTACTACCAGACTGCGGATTACTGCAGAAATTACACTTCGCCGCCTGTCAGCTACGGTGACAGCAGCCATTATCTTGCCCGTTTGCCAGGCCCAGAGACCATGTTGAAGCCTCCACTGAGTCTCTTCCGCCATCCCCAGCAGCCTTTCCACCACATGGAATCTCTGCACCAGCTGGGACCTCCGCCAATGGCACCTACGCAGCCTCTCGGTCCACCACCCCTTGCCCCTGCTCAGGCGATTGGACCCCCAACAATGGTTCCAACCCAGACACTAGGCCCCCCTCCAATGACTGCTACTCACACGTTAAGACATCACCCCATTACCCAACCACACAGCTTAGGCCCGCCTCCAATGGCCCCATCTCAACCACTAGGGCCTCCACCAATGGCACACACCTTGGGTCCCCCACCTGTAGATCACACACAAGCAATAGTGCCTCCAACCATGGACCTCATACAACCGTTGGGGCGTCCACCTCTGAATCCTGCACAAACACTGGTGCCCCCACCTGTAGTGGCACACGGAGCCGGTCGATTCACCCTCCCTCCCAGCCCCATGTCCTCCCCTGTTGCTCCGGGCCCAGACCCTTCACACCTGCCCCCAATGCCCCGAGGACCGGCCCTCATCCAAGCCCCGATGTCCTGCCTCATTCCTGGTCCTCTCCCGGGTCAGGCAGCCCCAGCCAGCGAGCAGCCCCAGGATGAGGGCTCTCTGCTTGGGATGGAGGAGCAGGAAGACTCTCTGGGGTTGGGGGAACTGTGTAAACCACTGTACTGTAAACTCTGCAACGTTACCCTCAACTCTGCTCAGCAGGCACAGGCTCACTACCAGGGGAAAAACCACAGTAAAAAGTTGAGAAATTTCTATGCTGGCAGTCAACAGCCTCCAGCCATCAGGATTCCAGAAGTCCTTGAGGGGGCTGGCCAGACATCCCTCAGCTCAGGATCAAACGACAGTGACGGAGGCAGGCAGGCGCAGTATAAGGGGGCGACTCGGGTCATCTTGGCCACAGAGAACGACTATTGTAAGCTGTGTGACGCCTCCTTCAGTTCACTGGCAGTTGCACAGGCCCACTATCAGGGCAAGAACCACGCCAAGAAGCTACGGCTCGCTGAGGCCCAACAGAACTCCAATAACATGGAGGGCAGCAATGAGGCAGCCCCaagaagaaacagaaaagaTGGCAGTGAGTACAGACTGGTGAAAAACCGCCGCAGCCCACAGCTACCTGCTTCCATGCCagGGCCGTATTACAACCCCAGACCGAGGCAGCGCATCCCCAGGGACTTGGCCATGTGCGTGACCCCCAGCGGTCAGTTCTACTGCTCCATGTGCAACTGCGGAGCCGAGCAGGAGACAGACTTCAGGCAGCATCTGGAGAGTAAGCAGCACAAAGCAAAAGTGTCGGAGTTAAGATACCGCCACGAGATGGAGAACCTTGGCTACAGCTAAGAAACACAAGGGAGGATGGGGGAAGAGAAAAGACAGAGTGGGAAGGtgggaagacaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10137 ZMAT3; zinc finger, matrin type 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127411 lncRNA upstream 79768 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 88296 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA upstream 134741 10346197 ~ 10358788 (+) True G94427
XR_005640263.1 lncRNA upstream 196271 10204140 ~ 10297258 (+) True LOC120565491
TU127434 lncRNA downstream 4586 10507652 ~ 10509538 (+) True G94450
TU127515 lncRNA downstream 27630 10530696 ~ 10531381 (+) True G94515
TU127597 lncRNA downstream 208137 10711203 ~ 10711496 (+) True G94587
TU127612 lncRNA downstream 413859 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 445437 10948503 ~ 10948822 (+) True G94604
XM_039812410.1 mRNA upstream 42547 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA upstream 42547 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA upstream 42547 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA upstream 42547 10440585 ~ 10450982 (+) False kng1
XM_039811525.1 mRNA upstream 78703 10363462 ~ 10414826 (+) True atp11b
XM_039811647.1 mRNA downstream 40642 10543708 ~ 10553852 (+) True LOC120565703
XM_039811527.1 mRNA downstream 89771 10592837 ~ 10609226 (+) True LOC120565623
XM_039811026.1 mRNA downstream 114309 10617375 ~ 10627039 (+) True henmt1
XM_039811027.1 mRNA downstream 114309 10617375 ~ 10627039 (+) False henmt1
XM_039811028.1 mRNA downstream 114515 10617581 ~ 10627039 (+) False henmt1
TU127375 other upstream 333722 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 545299 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 590340 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 647548 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 647725 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 413859 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 443910 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 745509 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 925965 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2502510 13005576 ~ 13100445 (+) True raver2

Expression Profile