RNA id: XM_039812218.1


Basic Information

Item Value
RNA id XM_039812218.1
length 3360
RNA type mRNA
GC content 0.45
exon number 11
gene id depdc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9575258 ~ 9587669 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAAAAACACGGCTCGTAATTTTGAACAGACGGAGAGCAGCCAGGCAGAGCTGTGTGTATCTTCAATGCTGCCATTCATTATATGGTAGCAAAACATCGGTTAATTCCTTCCCTGAGTAATGGATATTTGTACCTCTTGTCATATCGGATGAAGACAAACGTTTTGTGTGATAAATATGAGTTCTCATGTTATCACTCCTGGACCGTACCGGGCCACAAAACTGTGGAATGAGGTGACTCGTTTGTTTCGGGCTGGTATGCCCGTCAGGAAACACCGCCAGAACTTCCGGCACCACGCCGCCTGCTTCACCGCCTCGGCCGCTGTGGATTGGATGCACCAGCTGCTCCGTAGCAACAACAATTTTGGCCCTGATGTCACCAGGCAGCAGACGGTGCAGCTCCTGAAGAAGTTTCTGAAGAACCACGTGATCGAAGATGTGAAGGGTCGCTGGGGCACAGAGGATTTGGAGGACAACAACACTCTGTACAGATTCCCCTCCACTTCCCCTCTGAAGCCCATTCCCTGTCCAGCCTCGGCCCCTGGCTCTATTAAGAAAAAATCTTCATTCAGGGACAAGGAGAGTTTCTTCAGGTTTAGGAATATCAAGAAGCAGCTTGAGAAGGAGACACAGGAAAATGTAGATCCTGCCCTCCAAGCAGAGGGAGAGAACGAGCCAATAGGAGAGCAGCAGGTGCCGAGACGAGAGCTGACGGTGGATGATGAACAGGAGATCTGGAGAGACATCACCCTGACCCAcCTGCAGAGGATTCTGGGCGTTGCATCTCTTGATGAGGTCTTAGACCAACGTTATGTAAACCCACAGAACATCATCCATAATATGACCAAAGTCAACAAGCATGGAGTGGTCACACTGGACGACAAGACCAATGACCTTCCACACTGGGTGTTGTCTGCCATGAAGAGCCTGGCCAACTGGCCGAAGTACGACAGCGCGCAGCCGTCCTATCCCGGCTTTGAGAGGGACGTCTTCAAAACAGTGTCTGATTACTTCTACAGCCTTCCGCAGCCAGTACTCACATACGAACTGTATGAACTATTTATCAACGTCCTGGgCCTTCTCCAGCCTCAGTGTGAGCGTGTGGCCATCGAGGCCCTGCAGCTTtgcaccctcctcctcccccccaacTCCCGCAGGAAGTTGCAGCTCCTTATGAGGATGATGTCGCGCATCAGCCAGAACGTGGACATGCCCCGCCTCCACCCCGCCATCGGCACGCGGACACTGATGGTTCACACGTTTTCCGGCTGTGTCCTGGGCAGCGCCGAGGAGTGTGATTTGGACGAACTGTTAGCTACCAGACTGGTGTCATTTCTAATGGACCATCAACACAGCATCCTCTCGGTCCCAGAGTACCTTCTCAGTGCTATCAATGACCATATACAGTACCTGCGCACTGTACAGGTCCCCATCGATGGTGTTTCCAATGTCGATGGCGGCAATCCAGTTTGCGTTCCAATGCCCATGTACGCGTTCTGCCGTCAAATTAGCGGCGCCGAGTTTGAACAGCAAAAGCTGGCCTCTTCCCAGAAGGCCATGGAGGAGTTGCTGGAGATGCTGCTGGCCGACCAAAACATGAGTGAGAAGGACAGACGCAAGAAACTGAAGCAGTTTCAGAAGCAGTACCCAGACATCTACAGTCGTCGGCTCCCCTCCTCAGACGGCACTAACAACAAACCAAAGATTAAACCTCCACTTCTCAACATCAAGAAGACCAAAGCTTTCAGCATCAGGAACTAAACCAACCATACAGGTTGTCCCCATTCTAGAAGCCGCAGTCATTGTTCCGCTGCACTGATACTGCACTGATACTTAGAGATCTCGAGAATTCACTCCTCGTTGCGGCCGTTAACTCGTTCTcgttttagttttagtcattCCTGCCGTgtctcatgtactgtatgtagtaaTGGGAGAGATAATGCAGACTGGAagacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggtgtgtgtgtgtggtgaccgCTGAATAAGATGAAGGAAAGTCGACAGTTCAGTTCACATTGATTACTGTGTTCAAATATAATATGGTTTTATTAAGCAaggttttttttgggaaaaagttTTTGAGTAACATCTGTGATAATTTGTAACGGTCAGATTTTCTATCTACCCATTTTCTTTTCCCCCTCCTGTCTTCTCTATTGctttggaagtgtgtgtgtatgtgtgttgcatTTTGGGAGAAATAATTCTATGATCACTGGTCAATATGGGAATATTTAGATTATAGATTTcttaatttatatgaatgatAACATTGGGAGCAGTGCTTAGATATCCTTGCTTGAGGTGTTTCTTGTCATGTTAACTGTTTTTATAGACTTCACTAAACATTGTTTATCATAGATTCtcaagtttaatttaaaatgatctTTAGTTTTTAGATgtggaacctttttttttccttcagaaTTGTCATTCTTGTCCTTTGagtcttttcttcctttttgctTTTAAAGCAGTTTGTACAGGAATGTTTAAGGCTTTCTCATCGGGGATCTTTTGATTTTCAGGATCTCCGCTTTTTTTCCATATACAACTCTGTTATTTTGAAATGGAGCTGGCCCTTCCCAGTTTCTTTCATTCCATGAGTTTGTGTCTCATATCCAACCCATCCCTGTTTAGTTTATTGGATAGAGAAATGTTTTGCACTGGAGTTAGGCATTGCAAATGGCCAGCAAGCTTCTGCCAATCATCAGAATAGTTAATTTATACACATTTTAATGTATATTTAGACTCCCTAGAGAAGGTTTCCCTAAACACCTGTCATAATTTGGGTTGAAGGTTGCTAATGCTTATGAATTTAACCTTGCATGTTTTCTCAACAGCTGTACGCATTGCCTCTAATGAGAGAAATAGTTGTCAAAAAGCATCCATTCATTTCAGTGATGGACGCTATTCAGTAAACAGAAGTGCAATACAGAACCCATTTTATGTATGAGTGTCTGAGGTAACATGTTTGGCTTAAAATTtcaaactattttttatttatctgatATGAAGTATTAGTTCTACCCTGATGTGTTTGTCTATAcctcaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatcagCAGTGTTATCAGGGGTGTTATATTGTACGCCTACACAGTTGTGCTCTTCCTCTATATTGTTTACTATGCAAAGTCCTGGGAAATAAATCTGTTTAGCAGTTtatttata

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127124 lncRNA upstream 23567 9547714 ~ 9551691 (+) True G94238
TU127114 lncRNA upstream 31764 9541467 ~ 9543494 (+) False LOC120566011
TU127116 lncRNA upstream 34199 9540537 ~ 9541059 (+) True G94231
XR_005640322.1 lncRNA upstream 79901 9494153 ~ 9495357 (+) False LOC120566016
TU127112 lncRNA upstream 79930 9493981 ~ 9495328 (+) True LOC120566016
TU127153 lncRNA downstream 74463 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 85762 9673431 ~ 9679737 (+) True G94259
TU127173 lncRNA downstream 104260 9691929 ~ 9693033 (+) True G94266
TU127336 lncRNA downstream 313526 9901195 ~ 9902122 (+) True G94373
XR_005640304.1 lncRNA downstream 321238 9908907 ~ 9912100 (+) True LOC120565916
XM_039812203.1 mRNA upstream 31723 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA upstream 31723 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA upstream 31723 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA upstream 31723 9384508 ~ 9543535 (+) True LOC120566011
XM_039812201.1 mRNA upstream 31723 9384509 ~ 9543535 (+) False LOC120566011
XM_039812221.1 mRNA downstream 1487 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 27126 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 178407 9766076 ~ 9785140 (+) True hps3
XM_039811353.1 mRNA downstream 198123 9785792 ~ 9796989 (+) True LOC120565507
XM_039811523.1 mRNA downstream 256602 9844271 ~ 9846275 (+) True LOC120565620
unassigned_transcript_387 other upstream 2889 9572298 ~ 9572369 (+) True trnah-gug_12
TU127128 other upstream 17690 9552296 ~ 9557568 (+) True G94239
TU127064 other upstream 415563 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1320683 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1329437 8237370 ~ 8245821 (+) False G94073
TU127191 other downstream 229952 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 257080 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 257080 9844749 ~ 9845981 (+) False LOC120565620
TU127346 other downstream 314616 9902285 ~ 9903189 (+) True G94376
TU127361 other downstream 359437 9947106 ~ 9948230 (+) False ttc14

Expression Profile