RNA id: XM_039812230.1


Basic Information

Item Value
RNA id XM_039812230.1
length 3586
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC120566029
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36889418 ~ 36917143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTAAAGTCCCTCCCCCTGCGATACTGTTTACCAGATTAGTTGATAAGCAACAGCTCAGTTCATGTGAGTCTAGAGGTTGATAAGCATGTGATCGCAGCTGCCCCCGGACCTGCAATCAGCGTAAGAAGCAATGGTTCGACGTGTGGCAGTGGTTGGAGCAGGCAGTTCTGGTCTGGCTTGTATCAAGATCTGTGTTGATGAGGGCCTGGAGCCTGTCTGCTTTGAAAGCAGCGATGACATCGGCGGCCTGTGGAAATTTAAGGAATCACCTGAGCCAGGGCGATCCAGCATCTATCGCTCCTTGGTGGTCAACACCTCCAAAGAGATGATGTGTTTCAGTGATTTTCCTATGCCTGCTCACTATCCAAACTACATGCACAACTCCCTGCTGCTGCAGTACTTCAGGCTCTATGCTGACCACTTTGACCTGCTCCGATACATTCATTTCCAGACCACTGTAAGGAGTGTTGCACAAAGGCCAGATTTCTCTCTGTCCGGTCAGTGGGACATAGTGACCATTAACggggatggagaggaggagagacacgTCTTTGATGCAGTTCTGGTGTGTTCAGGCCACTACACCCATCCAGCCTTACCCCTGTCAGACTTTCCAGGTAATGAGACGTTTTCTGGCAAGTGTTTTCACAGCTGTGAATATAAAAATGCAGATgcctgcagaggaaagagggtGGTGGTGGTTGGCATTGGAAATTCTGGAGGAGATATTGCAGTTGAGATCAGCAGATCTGCAGAGATGacatttCTCAGCACACGCCAGGGTGCCTGGGTTATGGGCAGGATGTCCACTAATGGTCTTCCCATGGACATGACAGCTATCACCAGGTTCAACAACATCCTCATACGGCTTCTTCCCAACACTCTGGTCAACTGGGCATTAGAGAGAGCGCTGAACCCCCAATTTGACCACAAACTGTATGGCCTGAAGCCCAGACACAGACCTTTGGACAAAAAGCCTTTGATCAATGATGACCTTCCTAGTCGAATCCTTCAGGGAGCGCTAGTAATGAAACCCAATCTGAAAGGATTCAAGAACTCCGGAGTTGAATTTGAAGATGGCACTGTGGAGGAGAACATTGACGCTGTGGTCTTCTGTACAGGTTATAATGGAAACTTCCCATTCCTGCCTCCAGCTTTATCTGAGGGGCCTCACAGAGAGTTGACATTGTACAAGACACTGTTTCCTCCTTGTCTATCACAACCCACACTGGCCGTCATGGGTCTTTTCCAGACGAAGGGACCAATCATGCCTATTGTGGAAATGCAGGCGCGGTGGGCTGTTAAGGTCTTTGCCGgTTTGAGCCGTCTTCCATGTAAAGAGAAAATGCTGGAAGTCATTGAGTCTGAGAGGAAGAGAAACATGAAAAGCTATGACTGCCCGAGAAAGGCAGCTCTCCAGGTAGACTTCATCCCTTACCTGGATTTCATGGCTGAGCAGGTCGGGGTTCGCCCTAACTTCCTGAGACTACTACTGAGAGATCCTGTGCTGTGGGTGAGGGTCTTCTTTGGTCCCTGCACTCCTTATCAGTATCGTCTCTCGGGGCCTGGACAGTGGGCCGGAGCCCGTCAGGCTATCCTCACTCAGTGGGAACGGGTGGTTCAGCCATTCAGAACCAGAGTGGTACCAGAACCAGAGAGCAGGCCGTCTGTCCTATTTTCTCCCTGGCTGCTCACATTTGGAGCAGCTGTCACAATAGCTGTCCTTCGGTCTAAAAATGAGATTATTCCAGTGCTGCAGGGTGCAGCCCACTTTCTGGACAGCATGGTTCACAAGGTGGCAGTGATCGGCGCGGGGATCTCTGGTCTGACCAGCATCAAGGCCTGTTTGGATGAAGGTCTGGAGCCTACCTGCTTTGAGAGCAGCCATGACATTGGAGGTCTATGGAGATTTAAGGAGAAGCCAGAGCCTGGACTTGCCAACATCTATCAGTCGGTGGTCATCAACAGCTCCAAAGAGATGATGTCTCTCAGCGACTTCCCCCCTCCAGCTGAGCTCCCCAACAACATGCACCACTCTGAGGTGCTGCTGTACATGCGCCTCTACGCTCAGGCCTTCAAACTGCTGCAACACATCCACTTTAAGactaCCGTTGTCAGTGTGAGGCAGACCCCAGATTTTGCAGCGACCGGCCAGTGGGAGGTGgagacagaggggagagagggtcCCAGGGAGACTCGTGTTTTTGATGCAGTGATGGTTTGTACCGGACACTACACCCAGCCTCACCTGCCCCTCAGCGACTTCCCAGGTGTTGAGACTTTTAAAGGCAGATATTTCCACAGCTGGGAATACCGCAACACTGAGGGTCTGCAGGGTAAAAGAGTGGTGGTGATTGGGATTGGGAACTCTGGAGGCGATATTGCTGTGGATATCAGTAGAGTTGCTCAGAAGGTGTACCTCAGTACCAGGAGCGGCGCGTGGGTGGTCGGCCGTGTAGGGCAGAGGGGGCTCCCAGCTGATCTAGTTGGGACTTCTCGAATGGATATGATGAAACAGAAGCTCTTCCCCTCGTGGATTAATAGGATGGTGGAGAAGAAGCTGGACGAAGCATTTGACCACACATTATATGGTCTGAAACCAAAACATGGATTTTTCGAACAGATCCCTGTGGTGAATGACGACCTGCCAGCTCGGATCATCTCAGGCCGTGTTCAGGTGAAACCAAATGTGAAGGAGTTCCGTGGGTCCAGTGTGGTCTTCGCCGATGGGAGCATCATAGACAAGGTGGATGTAGTTGTGTTTGCCACAGGCTACAACTACAGCTTCCCCTTCCTGCCCCCAGCTCTGCAGGCTAAAAGTGGTTACAGGCTGCGTCTCTACAAGCATGTGTTCCCTCCGGCACTGACCCAGCCTACTCTGGCAGTGGTGGGCTTCATCCACGGCTTCGGGGCCATCAACCCTCTGGCTGAGATGCAGGCCCGCTGGGCTACAAGAGTGTTCAAAGGCTTCACGACCCTCCCCTCAGAAGAGACCATGATGAAGGAAATTGAAAAAGATACAGTAACCATGCACCTGAGATATGCCTGCTCAGAGCGGAACCCCCTCCAGGTGGACTACATTCCTTACCTGGACTCTCTGGCAGAGCAGGTGGGGGTTCGGCCAAATATACTGTGGCTCTTCCTGAAGGACCCCAGACTGGCTGTGGAGGTTTTGCTGGGTCCCTGCACTCCTTATCAGTACCGACTGACTGGACCGGGCCAGTGGGCCGGAGCCCGTCAGGCCATTCTCACTCAGTGGGAGCGGGTGCGTCAGCCTTTCAGGACCAGAGTGGTACCAAAACCAGAGACCAGAGCCTCTTCTAGTCGGAGGGTCATAGTGGTTATCTCAGGTTCTGTGCTGCTGTGCTGCATCTACTACAATAAAcaccttctcttcttctctcctccggCATTCCTCAGATCTCCTGAATACGCTGCATGATTATGTACATTTATGATAACATGATAATGAGGCAGCAGTGAAGCAGCACACTACAACACCGTATCTCAAAGTGCTATAGGCAGAGCATCTTCTTAGACTTTAATGTGACAAATTGAATGAGAAATAAAGTCTTCAAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135687 lncRNA upstream 20424 36863980 ~ 36868994 (+) True G100714
TU135666 lncRNA upstream 134593 36754580 ~ 36754825 (+) True G100699
TU135628 lncRNA upstream 210588 36678498 ~ 36678830 (+) True G100668
TU135627 lncRNA upstream 211490 36674449 ~ 36677928 (+) True G100667
XR_005640229.1 lncRNA upstream 237528 36649341 ~ 36651890 (+) False LOC120565379
TU135720 lncRNA downstream 18024 36935167 ~ 36974049 (+) True G100727
TU135709 lncRNA downstream 20022 36937165 ~ 36958330 (+) False prrc2c
TU135710 lncRNA downstream 20022 36937165 ~ 36958330 (+) False prrc2c
TU135711 lncRNA downstream 20022 36937165 ~ 36958330 (+) False prrc2c
TU135718 lncRNA downstream 51544 36968687 ~ 36978162 (+) True G100726
XM_039812228.1 mRNA upstream 7025 36875647 ~ 36882393 (+) True plpp6
XM_039812100.1 mRNA upstream 147422 36725189 ~ 36741996 (+) True lonp1
XM_039810322.1 mRNA upstream 168519 36713375 ~ 36720899 (+) True rsph4a
XM_039811841.1 mRNA upstream 177165 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA upstream 177165 36704455 ~ 36712253 (+) False dohh
XM_039810357.1 mRNA downstream 5350 36922493 ~ 36931245 (+) True LOC120565044
XM_039810358.1 mRNA downstream 5353 36922496 ~ 36931245 (+) False LOC120565044
XM_039810351.1 mRNA downstream 15512 36932655 ~ 36958360 (+) True prrc2c
XM_039810354.1 mRNA downstream 15512 36932655 ~ 36958360 (+) False prrc2c
XM_039810353.1 mRNA downstream 15512 36932655 ~ 36958360 (+) False prrc2c
TU135631 other upstream 190549 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 354879 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 354879 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 414223 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 660844 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 215026 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 546771 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 1960068 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2543303 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2643979 39561122 ~ 39565955 (+) False reps2

Expression Profile