RNA id: XM_039812271.1


Basic Information

Item Value
RNA id XM_039812271.1
length 2245
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120566051
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3630184 ~ 3633365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaatgtgggaaGGTTGCTAAATATCAAGCAGAGACTTCAACCAGCATCTTCTGTTACCGTTAAAGAACAGAATAAACACAAACCCGATCTGCACCGGAGGATTATGGGTACATGATGCCTGGATAATTTAGCAGAGCTTTTTACCTGCTCTTCATCTTTACTCCGACTTGAAAGCCAGAACAAATCCATCTCTGTTGGGATAgcttaaagagcccctattatgcttttggggATTTTTCCCGTCTTCCAAAAGGACCAACTCTGGGATCTTCCAAAAGGACCAACTCTGGGATCTTCATAAGGGACAAACTCTGGCATCTTCCAAAAGGACAAATTATGGGATCTTCCAAAATGACAAACTATGGGATCTTCCAAAAGGACAAACTCTGGCATCTTCCAAAAGGACAAATTATGGGATCTTCCAAAATGACAAACTATGGGATCTTCCAAAAGGACCAACTCTGGGATCTTCCAAAAGGACCAACTATGGGATCTTCCAAAAGGACAAATTATGGGATCTTCCAAAATGACAAACTATGGGATCTTCCAAAAGATCAAATTATGGGATCTTCCAAAATGACAAACTATGGCATCTTCCAAAAGGACAAACTATGGAATCTTCCAAAAGGACAAACTCTGGCATCTTCCAAAAGGACAAACTATGGGATCTTCGAAAAGGACAAACTATGGGATCTTCCAAAAGGACAAACTATGGAATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAAACTCTGACATCATCTTCCAAAAGGAAAAACTCTGGCATCTTCCAAAATGACAAACTATGGGATCTTCCAAAAGGACAAACTCTGAGATCATCTTCCAAAAGGAAAAACTATGGGATCTTCCAAAAGGAAAAACTATGGGATCTTCCAAAAGATCAAACTATGGGATCTTGCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACCAACTATGGGATCTTCCAAAAGGACCAACTATGGGATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAGACTCTGGGATCTTCCAACAGGACAAACTATGGGATCTTTCAAAAGGACAAACTATGGGATCTTCCAACAGGACAAACTCTGAGATCTTTCAAGGGGACAAACTATGTGATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAGACTCTGGGATCTTCCAACAGGACAAACTATGGGATCTTTCAAAAGGACAAACTATGGGATCTTCCAACAGGACAAACTCTGAGATCTTTCAAGGGGACAAACTATGTGATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAAGGACAAACTCTGAGATCATCTTCCAAAAGGACAAACTATGGGATCTTCCAAAGGGACAAACTCTAAGATCTTCGAAAAGGACAAACTCTGGGATCCTCCACATCTTTGTGCTGCTGTTCGTTATTTGTCTCAGGTGGTACCACTTCAGCAAACCTTTCACTGAACTGTGTACTTAGACTGGTTAAAGGGTTAAAGGGTGATCCGTCTAATCCGACAGCTGAATGAATCCAAGTGCTCTTAATCTTTCGACCTCCTCCTCCTTCGTCTTTTCGTTTGTATTTGAAAGCATGCTGGCATGCGTTCTACCTGGCTTCACTTGAAGTCAAGATGCGGTTTTGACTTTATTGTTGCAAAGTCAAAACAAAGTGGGATTATGAGAATCCTACCAAAGTCATTTGCAGCTAACAGGTGCTAGTTTGTGTTCAGTTACTACTTTAATACTTAAGTACGTCAGGTTTACAGATTGTTTACTGACATCTGAGATTAGGAGTCATTACTGATTATgtaaatttgacaaaaaaaacttggaGGTAACCATATAGTCATGGCAGGTTGAATTTTCCAGCACTTAAAAACTGAAATTAGTTGGATTATGGAAGGTAAGAAATCAGTTTGCTGGTTAGGAAGAAGGTCATGATGAATTAAAGTATTACGTTAACTTTACATGATTTGTAGTTGGAGTgtaattttgttatttttcaacctggaccctgttttcccatgcattggtgtctaagtgactaatgtgaacaaaaatcttgaGCAAAAGTCTGTAACACAGTCAGTCAGCGTctactaaaagttctgttgttgctgctgacagactcagattattattatacacgctaaaaatcctgattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125179 lncRNA upstream 4249 3620067 ~ 3625935 (+) True G92850
TU125182 lncRNA upstream 10816 3602367 ~ 3619368 (+) True G92853
TU125216 lncRNA upstream 17088 3607311 ~ 3613096 (+) True G92879
TU125215 lncRNA upstream 26854 3602789 ~ 3603330 (+) True G92878
TU125213 lncRNA upstream 45342 3584135 ~ 3584842 (+) True G92876
TU125220 lncRNA downstream 10924 3644289 ~ 3647676 (+) True G92881
TU125239 lncRNA downstream 49008 3682373 ~ 3702717 (+) True G92883
TU125243 lncRNA downstream 83740 3717105 ~ 3731760 (+) True G92885
TU125245 lncRNA downstream 129707 3763072 ~ 3769824 (+) True G92886
TU125249 lncRNA downstream 148696 3782061 ~ 3783685 (+) True G92887
XM_039811502.1 mRNA upstream 56035 3217726 ~ 3574149 (+) True LOC120565597
XM_039811258.1 mRNA upstream 281968 3337832 ~ 3348216 (+) True LOC120565455
XM_039811247.1 mRNA upstream 627645 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 771066 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 789325 2821642 ~ 2840859 (+) True LOC120565422
XM_039811503.1 mRNA downstream 81554 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 193498 3826863 ~ 3854810 (+) True LOC120565880
XM_039811203.1 mRNA downstream 498498 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 508213 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 513128 4146493 ~ 4151003 (+) True LOC120565404
TU125177 other upstream 23359 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 36800 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 52204 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 139824 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 263455 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 563459 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 651537 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 656976 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 1078196 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2402004 6035369 ~ 6040119 (+) False G93613

Expression Profile