RNA id: XM_039812274.1


Basic Information

Item Value
RNA id XM_039812274.1
length 1580
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120566053
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7398138 ~ 7413692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACACTCTCAATCAAGTAGCACTCGGTGCATGAGCTCTGAAGGCGCCGAAAAGCTTTACGATATCCTGGGTCATTAGGGGCGGCTTGAAAACGATTGGACGCAGTAACAACAAGTGAGAGGGCCTGAGCGGTGGCGCTAATCACTCCTGGGACACTACATGATACACaacttaaacaaaacaaaatccctAGTGTGTCCTTTGTGGGGCACTACATGATACacaactttttaatttttttaaatccctaGTGTGTCCTTTGTGTGCTTTCCTCGAGACTTTTCGCTGACATGGGTAATGGAATAAATAAGATCCTGCCTGATCTGTATCTCGGAAACATCAAAGTAACAAGTGCGAGCAAGTACCAAAGACTTTTACAGTATGCTCGAGACAGGGAGCTGTTGGCACAGCACAACATCACCCACATCCTATCCATCCATGACACAGCTGCACCCATCCTGGAGGACATGACGTACCTGTGTATATCTGCTGCTGACCACTCTAAGCAAAACCTGATTCAGTTCTTCAGAGACAGCATCATGTTTATCCACGAGTCCCGACTGAAAGGAGAGGGTTGCCTCGTTCACTGTGTGGCAGGAGTGTCCCGCAGTGTGACTCTGGTGGTGGCTTACATCATGACGGTGACGGGCCGCGGCTGGGTGGAGTCTCTGGCGGCGGTGAGGGCGGCACGGCCGTGTGCGGGGCCCAACCTGGGCTTCCTCCGGCAGCTGGAGGAGTTTGAAAACACAGAACTGACAGAATATCAGGCCTGGTGGAAGGAACGGTACGGGAAGAACTCGTTCAACGATGACGAGAAGATTGAAAACCTTTTAACTCGGAAATCCAACagcgacagcagcagcagcaatagcATAACAACCAGCATCACACCTGAGCTGGGCACAAGTGGCACCTGAAAGAAATGTCTTCTAAGAGTCTCGTCTTTCCTGAAATCAAGCAGCTGAAGGACTGCTATTATTGTCATTATTAGAATTATTATCAGCTGTTTTTCTTCATCGTCAACCCTGCGGAGTAAAGCTACAGCAGGAACCTGTTCTGTACCCATATTACCTTGAATCTCATGTTTGCAGAAAGGCTGAGGAGTCATGTGAGGGGGGAATTTTTTCATGCCATTATCTCAGCCCCTCTTTCGTCATGTCATGTCCTCGCCTCTAACTGTCAAAAACACATGCAAGGGCAGTCAAGCATGACACCAAGGAAATATGTACATACAGTCCACAGTGTGAACACACATTTAGCCGCATTCCCTCCCCCGGttagttatgttatgttgtgttgaCTTGAAATATGAGTATTACTTACTGTAGACAGTGTGGAAGCTGAAGAATACTGTATCAGTATCCAGTAAAACAGTATCAGAAgcagtatttatttataactCTGTTTTATtccttaatgtgtatttttgtttttgttgtaaaaATGTGTTCATGGTCTAAATTAGACTCTCAATTATAACATCTTGTGGAGTTAATGATTGACACCTACATTTCTGCTCCAGATGATATAGGCATTTACACAtgaatttgcattttatttaataaaatccATTAATTGAG

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640327.1 lncRNA upstream 2860 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 70452 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 74712 7322066 ~ 7323426 (+) True G93932
TU126742 lncRNA upstream 76683 7318842 ~ 7321455 (+) True G93931
TU126703 lncRNA upstream 110985 7271936 ~ 7287153 (+) True G93912
TU126801 lncRNA downstream 111298 7524990 ~ 7525343 (+) True G93985
TU126802 lncRNA downstream 143562 7557254 ~ 7615427 (+) True G93986
TU126854 lncRNA downstream 465227 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 466846 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 478532 7892224 ~ 7895718 (+) True LOC120565893
XM_039811822.1 mRNA upstream 18794 7353848 ~ 7379344 (+) True LOC120565797
XM_039811515.1 mRNA upstream 112379 7263547 ~ 7285759 (+) True LOC120565613
XM_039811275.1 mRNA upstream 270866 7108149 ~ 7127272 (+) True igfbp3
XM_039811274.1 mRNA upstream 330204 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811272.1 mRNA upstream 426838 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039812533.1 mRNA downstream 1749 7415441 ~ 7423820 (+) True LOC120566212
XM_039812332.1 mRNA downstream 166500 7580192 ~ 7581837 (+) True foxq1b
XM_039812331.1 mRNA downstream 172449 7586141 ~ 7590299 (+) True foxf2b
XM_039810225.1 mRNA downstream 189768 7603460 ~ 7605630 (+) True LOC120564954
XM_039811558.1 mRNA downstream 448522 7862214 ~ 7867728 (+) True LOC120565646
TU126750 other upstream 47551 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1029784 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1184121 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1358019 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2684953 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 484980 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 823678 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 823678 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1733470 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 2138604 9552296 ~ 9557568 (+) True G94239

Expression Profile