RNA id: XM_039812286.1


Basic Information

Item Value
RNA id XM_039812286.1
length 2085
RNA type mRNA
GC content 0.50
exon number 18
gene id si:ch211-51h4.2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 33772446 ~ 33875096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGTGCTGAAGCTGAATGGTGCTCATCCTCAAACACAGAGAGCATCGCGGATGATTCATCGGGCGCCTGCAGCATCCAGAGGACCGTGCGCGTTCACGCGTTgcgaaagagagaggaggaaagagagggtgAAAGAGGAGGTgaagggaagggggggggggagatatgGTAATGAAAATGATGGCGACCGATGCAGAGGAGATAAGAATCCAAACAAGCCCCTGTCCCATCCCCGACAACAGTCTCAGCACTCTGTCCATCAAAATTACGCGGAAAAACCAGGATAGACACTGGAAGTTGCGGTTTATTTACCTGCAGTGCTATTTCTTGACAATTGCAACAATATTGGGAACTGGAATCTTAGGTCTTCCAGTAACGATAGCTCATGCTGGACTGGTGCCTTTCCTCGTCTCCTTTCTCATTGGTTTCTTTGTCCAGGCCTTGCTTATCTACTTGTTTGTGGAACTCCTTCAAAAATGTCAGGTGGTGCAGCTAGAATCTCTTAAGACAGGTGTCGCAGAGTGTATTGTGATGGATCAGGTGGGCGTTGAGGATCCAGGCCCCAcagaggatgaggatgaggatgatgatgaaaaTGCACAAGCAGatACAGGTTTACTACAGCAGGATGCAGTAGCTCTGCACAACCAAGCAGAAAGCCTGCAGCCCAACCTTCACCTGCTTGGCTACCTCTTCCTCTCCCGGCCCATGAGCTACGCCTTCAACTGCATCCTCCTCTTCCAATTCCACATCTATGTGATCCCGGCCTTCGCTTGGATTCTATCTCTTGCTATCTTACTCGCCTACACAGTCATCCAGCCAATCACTTCGCTGCTTACCCTGCTGAAAGGAATGCTGCTCGTTGTCACGGTGGCTGTGACATTTGCAGTGGGGTCAGAGGTCGGCCTTCAGAGCAGCAGTGACTTCAGTCAGATGGGAAAACCTTTCCTAATGGGCACTGTGGCTCTGGGAGGGATTGTAAACGTGATGCCTCTGCTCTTCTCGCAGATctcacacaacaaaacacagATCCTGTGGTTTCGGAGAGCAGTGCTCGCAGGCCTGACAACCTGCACTGTGCTCAACATCCTCTGGTCCTGTTCCTGCTTGACGTCCTGgtgCTGGGCAGTGCTGGAAATCGTGCCCCAGACGTCAATACCAGAAAGGCGGCTGGCAGCTGAGACGACAACCCAGCCCGGCCCCAGCAACCTGTCTGGTCCTCATTCCTCCGCCTCCCGTCTGCTGTACTCCAACATCTCACTAGAAGAGTCTGAGAAAGCAGGAGAGATTGCAACCATACCATTGACTAAGATTATTAATGAACGTTACAAGGCGTACTCCTGGCTGGCTGAGCTGATCCAGGTGTTTATAGCCATCAGCGTCACTGTGTCCTTCCTGGTAATGGGATCTGCCATGAAACATACCATTGATGGTCTGGTGAGCTCGGTGTGGAGCAGCAGACTGGAGTGGCTGTCTAAAGCCTGGGAGCGAAACCTGCCCAACAAAGAGCACATCTGCTCGGCAAGAGGCGTGGCTAAAGGATTCATGTCACTGCTTGCATTCCTTGTCATCTTTATCGTTTCAGTGTGTGATCCCAGGgGTTTTATTGTCATGTTGGACAAAGTTGTTTCGTTCTCCCTCAACACTGAAGTGGGACTTTTTGTCTTCATCATGCTGAGAGAGTCCAGAGAAAATAGATTCCAACACCTTGCAATCCCTCTGCCAGTAGGTGACTGTGTCTTCAGCCTCAGTTGGCTGCTTCCCACCTACTTCCTGTTTGCAGTAACCTACGACGTCCTGCAGACCCTGGCAGAAGTGGCTCATTTCCTGCCTTTCTACAGCCACAGTCAGGAGCCACACAACCACACTGGGACTGGGAGTGTAACAGCAGCCAACGTCTCCGTCCTGCTCTGATCCTCAAGCAGCCACGTCAGAGACGGGCCAGAAGGAGTTGaaaattgccaaaaaaaaatctgaagctTCGCAAATGCTTTTATATTGTATTCCCACTTATCAAGCTCTTGACACACTTcaatcattttgaaaaatacgttttatttgtttttttacggaagaggattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134826 lncRNA upstream 567700 33204180 ~ 33204746 (+) True G100043
TU134811 lncRNA upstream 692605 33078937 ~ 33079841 (+) True G100028
TU134794 lncRNA upstream 886297 32881680 ~ 32886149 (+) True G100013
TU134775 lncRNA upstream 1179261 32592939 ~ 32593185 (+) True G99994
TU134768 lncRNA upstream 1265236 32436847 ~ 32507210 (+) False nlgn1
XR_005640305.1 lncRNA downstream 345527 34220623 ~ 34222131 (+) True LOC120565927
TU134936 lncRNA downstream 345566 34220662 ~ 34222122 (+) False LOC120565927
TU134947 lncRNA downstream 428994 34304090 ~ 34304346 (+) True G100148
TU134967 lncRNA downstream 575185 34450281 ~ 34450515 (+) True G100161
TU134961 lncRNA downstream 627468 34502564 ~ 34504367 (+) True G100159
XM_039812233.1 mRNA upstream 9527 33243213 ~ 33762919 (+) True LOC120566032
XM_039811895.1 mRNA upstream 893813 32436860 ~ 32878633 (+) True nlgn1
XM_039811664.1 mRNA upstream 1360999 32221034 ~ 32411447 (+) True ect2
XM_039811415.1 mRNA downstream 156794 34031890 ~ 34063575 (+) False si:ch211-247n2.1
XM_039811418.1 mRNA downstream 156800 34031896 ~ 34063575 (+) False si:ch211-247n2.1
XM_039811419.1 mRNA downstream 158369 34033465 ~ 34063575 (+) False si:ch211-247n2.1
XM_039811413.1 mRNA downstream 158369 34033465 ~ 34063575 (+) True si:ch211-247n2.1
XM_039811416.1 mRNA downstream 158369 34033465 ~ 34063575 (+) False si:ch211-247n2.1
TU134831 other upstream 503286 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 893831 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 2129000 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 2140945 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 2146650 31622698 ~ 31625796 (+) True G99791
TU134878 other downstream 113 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 629547 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 2351991 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 2598442 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 2620388 36495484 ~ 36534539 (+) False smim24

Expression Profile