RNA id: XM_039812293.1


Basic Information

Item Value
RNA id XM_039812293.1
length 3934
RNA type mRNA
GC content 0.46
exon number 18
gene id tdrd5
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14966266 ~ 14984677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctgtgtctgtatttaAATAAGTTGtcaacaaaattaattaatttaaaattgcTGCAGCGGCAACTTTAGCAGTTAACTCACTGGATGCCATGCTTAACCTCTAGAGCTTTTCTGATCTGCAAGTCAGAGGCTAGCTAAGTGCACGTTTGCTAATTTAACAGTTGAGTCGGCGGTGATGTGTCAGTGGTCAGTGCAGAGCAATGATGTCAGCAGGCAAGATGAACCAAGAAGTAGTTTTGGCAAAGCTGAAGAAGGATGTTCGTTCCTTGCTCATTTCATCTAAGTTGGGCTTGGACCCCGAACAGCTCAGGCGAGACTATGTCCAAATGTTGGGGCATCCTATGCCCCTGAAACTCCTGGGCTTCAGAAACATCATGGATATGGTGAAGGAGATGCCTGATGTGGTGTCGGTTAACTTCAGGGTAGATGGCAGCACATTTTTAAAAGCTGTAAGTGACGAATCCACCCGAAACATTGAGGAGCTGGTTGCTAAGCAGCGCGTGTCTAAGACCACCAAGAAGTCCAGGACAGGAGGTGTCGGCTACTTCTCGCCCCGCTACTGTCAACAGTCCCCCGCTGTGGTCCTTCCCAGAAGAGGTCGTGCTCCTTTGGCTGTACCTGCCCAGTTGAGGACACAGCTCCGCATTCTGCTCTCCCAGGGTCCACTCAGGTTGTCCGAACTGGAAACCAGCTTCCTGCGCTGCTTCGGCTACCAGCTGCGTGTCTACAACTACGGCTTCTACTCCACTGGAGAGATGCTGGAGGCAGTGGCGGACCTAGTCGTTATCCAGCAGAGCAGGCTGGGCTCAGTTCTGACCCTGAGGGAACATATGCTGCCCAGGCAGCTGCTCAGACCGACTAGCTTACCAAGGAGAACTGGACCCGTAAAGTCAGTATCGCCGAAAACTGTCCAGTCAGCCTCCAAAGGGCCAGACATCAAAACTCAGACACCAACAATACCCCCAGTCCTGGTGAAGCAGAGTCCTCTGAGCCATCCAGCTACTGATACTACCTTAGACCCTGTTCATAAAGAGTCAACAACTGTTGGTAACAAGACACAGATGGCTGAGAAGGACCAGGAAGCGGACCCAGAGCTCTGTCAGGAAGGTCGGCTCTTTCAGAAATGTGTCCAAAAGCTGGAAGAGGAGCTTCGCCAGCAAATAGTGGAGAATGGAGTCGCTGGCACCATTAGTCAGGAGCTGAAGGACAAGCTGCGAAAGGTTGTAGGTCAGACCAGTGGTGGATTATCGGTGCACGATCTGCCTGCTGAGTACAAgAGGCTTTTTGGTGAGGATGTTCCACTGCAACAAAGCGGCTTTGTCAGTGTCACTGAACTGGTCAGTGCCATGAGTGACACCTTCCACCTGAAACCTGTAGTGGATGACAATGGGCAACACTGGATAGTCATGGTCATAAATGGCGATGACAATACGCAAtcagacTCAAAGGTGACTGAAAGTTCTGGTGATATTGGGAAGCTGCCAATTATGAGCTACTATTTCAGCTGTGAAGAGTCTCCTTGGGAAGGCAAACTGGAAGGAGACAACGATAATATCACAGAAGATTATGAGAACAAGGAGCTAGAGACCAATACAACCAACAATTCCAAGAATACCCATGAAATGATGTACCCTGCCATTCAGGTGCATTGCAGCCCTTCAGTGCCCCTGGACGCCCTGCAGAGTCAACGTCTCAAACCGCCGACACCCCATGGTGCTCGAGAGCTGGTAGAAGTCCTGGTCGAACAGGTGGAGTCGCCAGGACATTTCTACATCCGCTTCAGCGAGAGTGAAGAGTCTCGAGCAATGGAGGACATGATGATTGAGATGAGACGATGTTACACCTATCCTGAGGTGTCAGAGCGTTACCGCCTCCCTGAGCGATTTGTCAGACGGGGTCAAGTCTGCTGCGTGTCACCCAAAGGAATGTGGTTCTACCGGGTGGTGATCCACCAGATCATCAGCCCCACTCAGGTCGAGGTGTACTATGTCGACTTTGGCGATATAACCGTGGTACAGAGCACCAACCTCAAGTTCCTCAAGTCATGTTATTCTGAACTTCCGGCACAAGCTGTTCCTTCATCACTGGCTGGAATTAAACCCACCACTGGCAGCTGGACTGCTGAGGCAAGGGCTTCTTTCCAGAAGCTGTGCTCCGAACGCACCCTGGTGGGCGCTTTGGATTGTTACACCGGAGATGTGCTTCAGCTCTACCTGTGTGACACACATACTGATATCGACATCTACATCCACACCATCCTGGTGAGCCAGGGCCATGGTACAGCCTGCAGCCCCACAGCCAGTGCAGCATTGTGTGTCCAAATCCGCCCAGTGAGTCTCTACCTCGGGGAGGGAATGGTTGACCTGCCAGAGGTAGAAGAGGTAGCCACTTTTTCACCCAAGCCAGCAAACATGATTGAACAGTCCATGCTGACTTCACTGAAGGTTGAGGAGGAAGAGCTGCCCGACCTGGAGTTTATTGAGGACAAAGAAGTCAGCCCCCATCTCCAGGGTATGGACGCCAACCCGTTCAATGCTCTAATAAATGGTCAAACCTTGAGCTACAGTGAATTGGGCTGGGCCTTGACCAAAAAACCGCCTCCTACCAGCCCTCTCGCCCCTCCAGATTTGATCCAGACCCAGAAAACCCTAACTCTGTGTGAAGCTGATCTTAAAACACTGAGCATACCTCCTCCACCAACTCCATCCAGCATCACTTCCAGCTCCTGCTGTCCAGCACCAAAAGAGGAGCAGCACTGCCCCAAAGTCGCTGCCCACTCGTTGGTCAGGCCACCTCCGATCCTGAAGACCCTGAGCCTCCACACCCCTGACCTGGCCCAAATCCACGACTACACTCAGGGTGTACCAATTTCTCCGCTCCATCTGCGGCACTCTGGCCATCTGTTTCCTCTGTTTGGGACCAGGTAGGACGTGTCTCCTACATCCAACACAGCCAGAATGAGTCAACACCCAAAGGAATGAACATTTATTCCATAATAACTACTAGTAATCATAGTATCGGGACACTCTGATAATCCAGTTTTGGAATAATTTTGTCATCATTTTGAGTTATTTACCGACTTGCAAAAAGTGATAGAAGCATTTTTATAGGAAGTTAATTTTAATCTACGGTATTCTAGATCAGTTAAATTGTATGTTAGGctctgtttatttgtttgataaCTGTAATTGTAGCACTTTCCTAACAGTTTTGGAAGACAAAAGAAATGCCAGAAAGGATGgctgtcattttttaaatgtgaatacgCTTGTGAatgctttttgtttaaaaaaacaacaactttattCTTTGTGTAAAGcgtttaatatttttttcagaaGCCATCAAGAGGTCTGTGATGTGTTAAAtggtttaatttattttatatatatattaatattgctGTTCTGGACAAGCttaaaacatttacagtaaacattacagaaagtgttttattttgggaaataaattTTATTTGATAGACTATTTTAGTATTTTCCCTTTAGTCATTTCTTATTTTCCACAGTTAGCTTTAGTGGATCCAATGTCTCACATACATTTGTAGACCAATTTTAAAACAATGCTTTACATTAATACTGTATTCTTTAAAGCATGAAATATTTTAACACCCACGAGATGAGCGCACAGGAACAATgaattaaacaaaacaacaaaaagaaatctctaAACTCTAGATGCTCATTGCTGTGAATCAAGGTGCTTTACTGAGCAGAGCTGACAGCTATGGAGCAAATATGTTTGTTATTTAGCAGAGCTGCCCATGCAACCCAATGTAGATTTACAGTTCCAAAACCTACCACCTTTTCTCATCTCATTTTCCAAAATGATTATAAAAAAGAAGCTAACTTAATGTGTGTATTCTTCTAAAACATATGGGGAGGCTAGAGCTTGAAACTAGAGATTTGTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128812 lncRNA upstream 34461 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 34461 14931069 ~ 14932081 (+) False G95496
TU128807 lncRNA upstream 40939 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA upstream 40939 14924461 ~ 14925603 (+) False G95493
TU128802 lncRNA upstream 42706 14922981 ~ 14923836 (+) False dennd1b
XR_005640228.1 lncRNA downstream 237456 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA downstream 246694 15231371 ~ 15268185 (+) True LOC120565370
TU129007 lncRNA downstream 311607 15296284 ~ 15297193 (+) True G95640
TU129053 lncRNA downstream 403321 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 489917 15474594 ~ 15478157 (+) True G95710
XM_039812289.1 mRNA upstream 5305 14949168 ~ 14961237 (+) True axdnd1
XM_039812290.1 mRNA upstream 5305 14949172 ~ 14961237 (+) False axdnd1
XM_039812291.1 mRNA upstream 5305 14949403 ~ 14961237 (+) False axdnd1
XM_039812297.1 mRNA upstream 46915 14810370 ~ 14919627 (+) False dennd1b
XM_039812304.1 mRNA downstream 16492 15001169 ~ 15026319 (+) True fam163ab
XM_039811130.1 mRNA downstream 42334 15027011 ~ 15153577 (+) True rabgap1l
XM_039811131.1 mRNA downstream 42334 15027011 ~ 15153577 (+) False rabgap1l
XM_039811153.1 mRNA downstream 87921 15072598 ~ 15078471 (+) True gpr52
XM_039811132.1 mRNA downstream 142915 15127592 ~ 15153577 (+) False rabgap1l
XR_005640328.1 other upstream 49936 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 52509 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 345129 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1583798 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1746170 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1335817 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2870960 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2881871 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2883989 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2887033 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile