RNA id: XM_039812312.1


Basic Information

Item Value
RNA id XM_039812312.1
length 3728
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120566071
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39665221 ~ 39675560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGCGCAGCTTCAGTCTGGAGTCGAGACCGCAATGAAGAGATAAATAGAAGCCTTATCGTTTTATTTCAGAGTATTAGGGCTCCCATTCATTGCTAATTGAGAGAGGGCAGCTGACTTGGAAAGCTGCTAATGCGTCCGTCTGCTCGGTAGGTGAGTGAACGTTGGTGTTCGGTAGCGAAACTGGAATATTGTGGAAGAATGACATTAAAGGACGGGAGATGAAAGAGGGGCATAATGGATGAGACCTGTCACTAGCACTTGATGAAGATTCCGATTGACTCCTGAAACTGAACCATGGAGGGTAGCGATGATGTGTCTGTAACCAGGACGCTGTCCCAGACGGACGTGTGCAGCGCTGacgtgggaggaggaggagaaatcCCCAGTAAAGTGGAGGATGGAGGAAACCCGCTCAGTCCTGCTGAGTCCTGCGGTGGCGGTGGTGGTGgcagcggcggcggcggcggcagtGCAACAGGACTGAGCAAAGGCGGGCTCTCTAACCGGATGGAGCCTCCTGCACCGCCAGTTGTGAGCCCCACTGCTGAATCTCCGGGAGGCGTGGCGCTTAAAGTCGCCACAACCGTGCTGCACCCGGTGTGCCTGGGAGACAGCCCGCTGATGCTGCCCATTCACCTCCAGATGGCCGGGGCAGCCGGAGCGCAGCTCGGCCAAATGGGGGCAGCACCGTACTTGATAACAAGCCAGAGCCCTGTTTCACTTCCCCTGGTCCTGGATCAGCAGGTCCTCCAGCACATGGGCCCCTCTGTGATTCCTCAGAGCACTAACTGCCCTCAGCTGCCGCTCCAGAACAACGTCCTGTGTCCCAATCTGTTTGGTTTGCCTCCAGCGGTGGAGCAGAAGTCAGCAGGACAGACGCAGGACGCtaaccttctctctctcctgcagaATCCAGCTTTTGCGGCCATCCTGCAGGATCTCTTCCCGTCCCAGGCCGGTTCATCAACCTGTCAGTCACCGGGCTCCACCTTCTTCCCGCTTCCTCCACTCACAGCTCCCTACAGCTCCCCTCTGGCCCCGTTGGTCCCTCCTGCCACACTGCTAGTCCCCTACCCTGTCATCATCCCCCTGCCGGTGCCTCTGCCCGTCCCTCTTCCCATCCCCATTCCTGTCCCTCAGGCTGAGGACTCAAAGGGGAACATGCCAAAACCGGTTTGCACTGTGAGTAAAAGCACTCAAACGTCTCCAAAAGATACTACCTCTCCTTCGTTGTCTTCACGCAGATGCATGCCGTCGTTCCAGCCGCAAAATGTGTCTCCGTCCTCGCTCCCTGTAGATGAGGGACAGGCTCTGGACCTTTCTGTCAGAGCACGTCCAGTTGAACTAAAACAGGAGTACCCCAGCCCTCAGCAGGACAGCGTGCTCGACTTGTCAGTGCCCGCTGTGAGGAAAAAGTGCGTTCAGTCCGACAGGGAAGCAGCGTTGCGTTCTGGCCAAGACGCTAGTGGCACGTCTCTGTCTCTGGGTGTTGAATGCACTCCGAGTTTAGATTCCAAACTCCTGGGCAGTCTGGCTTCGCTGGAGTTCAGCCGGCAGCACAAGTGGGTGGTTGACAGCAGCGCCGGTGGGTCGAGTTCTCTGAGTCAGCAGGCGTCTCTGAGTGCAGCCGGCAACCTGGAGATAGTCAGCACCTCGCAGACGGCCAAAGTCATCGTCTCGGTGAAGGACGCCATCCCCGCCATCCTCTGCGGAAAGATCAAAGGCCTGTCGGGAGTCTCCACCAAGAACTTCTCCATCAAACGGGACGGCAGCCAGGGGCCGTCTCTGCAGCAGCTCTACGGCGTGCCGTCTGCGTCCCACGGCGAGCAGCACGACCCCAACAACCCGCATAAGAAGCTCCCTAAGAACAGAGCAATCAAACTGAAGAAGGTCAGCTCGCAAGAGATCCATTTCCTGCCCATGAAGAAGCAGAGACTTGCAGCGCTGCTCCCCAGGAAGTGAGAGCGCTCGGCCCAGGAGGATTAATACTTGGACCGCTCTCTGGTAATCCCTCCACAGCGTGTAACATAAAACACTTGTGGGGACATTTCTGTGATCAAACTCATACACTCCAAATGTTGCATAAGCTGAGACTCATGAGTGTCTGACAGCGTGACACCACACCGTAGTTACAGAAATGTGTTCCGTTCGGAGTTTTCAGACTTGTATTTTACATAATGCACTTCTCTACAGCGTTATACTCCAGCAGGAACGTTTTTGCATATGGCAGCGTAATGGGCTCTCCGTGTGGCTTTGGAGATGGtctttataaatcagagatgTTGAGGGAACATTTTTTGACTTTataattacagcaaagacacaTGGGCTCCATTTTTCCATTTGGCATCATGGTTTGTTTCCATATGTAACTTTTATTGAAGTGCACTGAAGACCTAAAACCAATCCTGATAGTTGAGGTTCTCACTGATCAGAGCAGAGCAGTATGTACTGGCAGGACGTGGCCGAGACTGTTTAAACGTGTCCCATGGTCGGAAATTCCCATAGTCATCAGTCGCTCACTGAAGCGATTCATTCTCCGATAGGGGTTTAGCATGACAGGCTAATAATGACTTGGCAAGGCCAGAGCCAcgatttcataaaaaaaaatagcctacaTGTTGGCAACAGCCATCAGTCGTGACTAAATACATTCTTATTTTGTTTAAGGGCAGGGAAAAAAAGGGACGTCTTAACTGTCTTCACATTTAAACAGAACTTTGTACAGGCCTGTCCAAATATAAGGAAAGTATTTCTGGAAAAGAGCTATTTTAGTTGCTGGCTGAATTAGCCGTTTTTGATTAGCTGGCAGTGCTTCAAAATacaagccaatgcagagaaaaCCCCTCACAGCAAGTGCATGAAACActagagccccccccccccctgctgttTCCATTAACAGACTAATGAAGAGAATCTAGGTGGAAGTTTTAATATTATTCTCACCAGTGAAACCAACTTAGAATGTGGAGAGGAGATGAAGTTGAACAGCCAGATTAAAGAAGAAATAATGAGATTTTTGGGATCAGTGAGAGAAAATACTGTATAATTGTGAAGTGTGATATTAGTCTGTTGTTAGAATCAGTACTAgtgagaccccccccccccgtcccaTTGTTATGATCAGAGTTGTGAAAGTGAGAGTATTGTTGTGTGTCAGTTTATTTATCCTCTCGAGTGCACTTTGTCATAGTTTAGTTGAAGACGTTACTGGGTTTCCCACCTATTCTACTGTGCTGCCCTTTTGTGATTATAGCATTTATGGAATCTGTGAATTATAGCAGCCATATGCAGACTGTCTGGATGAACAAAGGAGGGATGGAAAATACCTAGAAGCTCTACTTTTGACCTGTTCTTTATTTATATTGATGTACTCTAGCAATCCCTGATCATCTTACTTTAACTCATGTCTGCAGTCCTTTCAACAGAGGGCTCTTTGGTTTAGTAGTTTGAACTGATCACTCTGGTTGTACAGGATTTCACCCTAATTTATTCTTTGtacaacttttatttatagtCTGTATATATGCTGGATGGTCAGTTAGGAGACAGTGTGACTggatataaaaaataaacctgCTTCCTTTGTACCTGTCAGTCTCTTGAAGCACTTGTTGCTTCTTATTTGCATTAAGATCAGTGAAGAAACACAGTTAAATGTTTgcttactgtacagtatgtgtgcttTTTATATGGAAGTGAACTAAAATCTCTGAGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136719 lncRNA upstream 99266 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 227156 39437654 ~ 39438065 (+) True G101484
TU136677 lncRNA upstream 303513 39356483 ~ 39361708 (+) False prdm5
TU136663 lncRNA upstream 386268 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 474440 39190066 ~ 39190781 (+) True G101437
TU136732 lncRNA downstream 4518 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 63787 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 63787 39739347 ~ 39739963 (+) False LOC120565298
TU136817 lncRNA downstream 196096 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 229476 39905036 ~ 39908510 (+) True G101600
XM_039811121.1 mRNA upstream 3729 39597704 ~ 39661492 (+) False nhsa
XM_039811122.1 mRNA upstream 3729 39597704 ~ 39661492 (+) False nhsa
XM_039811120.1 mRNA upstream 3729 39597704 ~ 39661492 (+) False nhsa
XM_039811123.1 mRNA upstream 3729 39597704 ~ 39661492 (+) False nhsa
XM_039811129.1 mRNA upstream 3729 39630612 ~ 39661492 (+) False nhsa
XM_039810964.1 mRNA downstream 18352 39693912 ~ 39740277 (+) False LOC120565298
XM_039810962.1 mRNA downstream 18352 39693912 ~ 39740277 (+) False LOC120565298
XM_039810966.1 mRNA downstream 18352 39693912 ~ 39740277 (+) False LOC120565298
XM_039810971.1 mRNA downstream 18352 39693912 ~ 39740277 (+) False LOC120565298
XM_039810965.1 mRNA downstream 18352 39693912 ~ 39740277 (+) False LOC120565298
TU136718 other upstream 99266 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 200771 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 784616 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2175149 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2532916 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 839533 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1549531 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1550074 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1777114 41452674 ~ 41453306 (+) True G102165

Expression Profile