RNA id: XM_039812321.1


Basic Information

Item Value
RNA id XM_039812321.1
length 3043
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC120566076
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24524473 ~ 24531588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgagccatcgttaaggttatcaatttcagctgtgcttttcctactatgacaagtcaaaatgtctgctgtgaaaaaggcccatAAATAAACCTAAACAGTCCCTGCCTGCCCAGGCTGTGTGCCAGGATAATCAtgtgtgggtctgtgtgtgtgtgtttccagagaGGGTGGTAGAACGGTGCCCTTCCTGAGAGGAAGTTGCAGCAAAAGTGATATGACACAATTCGTCATTGACTCATTCCCTGAAGAACAATTAATACCAGTTTGCCATTGATTGTCTGTCTGCATAGTGGAGTAAATGCAACCACAAGATTGAGCGACTGACCATATAAAATGATGTTTCAAGAATTGGTTGATACTAGACAAAGCCTGCATCGCATGGTGCTGGTAGCTGCATTTATAGTATTCGTCCAAGACCTGAGCAGCGGAGGAGCAGTGCAGGCATGGACCTACAACTACAGCACCGTTCCCAGCCGTAGATGGCCTGATGCCCGCCAGTGGTGCCTGCAGCACTTTACAGACATGGTGCCCATCCGGAACCAGGAGGAGAGTGACTTCATCAATGATCTGCTGCCGTTAAACACAAGATATTACTGGATAGGCATAGTCAAAAAGGATGGCGAGTGGATCTGGCAAGAAACCTCTGAGAAGGTGCCTAAAGAGGCTCAGAATTGGGCACCAGAGGAGCCAGATAACATAATGAATCAGGACTGTGTGGAGATTTACAtaaagagggagaaagacacAGCCAAGTGGAACAACGAGAGCTGTCGGAAGAAGAAGGGAACCATCTGCTATGCTAcCTCTTGCAGACAGGATTCCTGCAGTGCCAATGCAGACTGTGTGGAGACCATTGGGAACTATACCTGCCAGTGCCATCCTGGTTTCCTGGGGTCACGCTGTGAAGAGGcAATCGCATGCAAACCCTTGCTGGATCCAGAACAGGGATCTCACTACTGTTTCCATCCCTATGGGTCCAATCGTTTCAACTCTTCCTGCCGTTTTGACTgtgaacttggctttcagttGGTAGGCGTGCCACAACTGCTTTGCCAAGCCAGCGGACGTTGGAACCACCATGTTCCTCTGTGTCAAGTAAAAAAGTGCTCCCCCGGTTTCTTTCCTGTTACGGGCAATGTGACATGTGTGGACCCTCTGGAGCCTTTCTCCTTTGGCTCACAGTGTAACTTCACCTGCCAAGAAGGCTACTACCTGACCGGAGACAACACATTCACCTGTCTGGCCTCGGGACAATGGAGCAACCCTACACCTACATGCACAGTGGTAAAGTGCAACAGTTTAAAGACTCCACCCAATGCCTTCATGCAATGTCAGGACCCTCGAGGAGTGTACAGCTATGGCTCAATATGTTCCGTGCTATGTGAAGAAGGATTTGATCTGATTGGCACAAACATGACAAAATGTTCTTCTCAGGGAAACTGGAGTCATGCACTTCCTGTTTGCCAGGCTAAGAGGTGTGAACCAATAAAGCCTCATCATGGCTCCCTATCGTGTTATGACCCAAATGGTTCCTTCAGTTTTGGTTCTTGGTGTACTACAACCTGTGATGAGGGCTTTCTACTGAATGGAACAGACAGCACTGAGTGCACCTCCCTGGGCATGTGGAGTGCAGACATACCACATTGTcttgCTAAGAGATGTCCAACTGTGAACTCCTCCTCTCATGGCTACTTGGTGTGCTCTGATCCTCATGGAGAATTCAGTTTTGGTTCTCTGTGTACATCAACCTGTGAGGAGGGTTTTCTCCTGAATGGGACGGCTGACATGCAGTGCACCTCTCTGGGCACATGGAGCACAGACATCCCTCATTGCAACGCTAAAAGATGTCCCGCTTTGGTCGCTCCCTCAAATGGCTCCCTAGTTTGCTCTGATCCTCATGGAGAGTTCAGTTTTGGTTCTCAATGCAAGTCAACATGTGAGGAGGGTTTTCTCCTGAATGGGACAGCTGACACAGAGTGTACCTCTCTGGGCATGTGGAGCACAGACATCCCAGGTTGCTTGGCTAAAAGATGTTCGACCCTGAGCTCTCCCTCTCATGGCTCCTTTTTCTGTGTTGATCCTCATGGAGAGTTCAGTTTTGGTTCTTGGTGTAAATCAACATGTGAGGAGGGTTTTCTCCTGAATGGGACAGCTGACACAGAGTGCACCTCTCTGGGCACGTGGAGCACAGACACCCCTCGTTGCTTGGCACAGCCATGCCCCCTACTGGCCAAGGCTCCACAACATGGTAAGATGAACTGCAGCCATCCATACTCTCCTTTCAGCTTTGGCTCCCACTGTGAATTTGAATGTGATGAGGGCTTCCGGCTGAGAGGAACACAGACTATGACATGCAACAACTCAGGCCACTGGAGTCAAGATCTACCCACCTGCCAGCCTGTACAGTGCGAGTCCATTCGTACCTTGTCTTTATCCCTGTCTATGAACTGCTCCCATCCTCTGGGGAACTTTAGCATTGGCTCCCAGTGTCTTTTCACCTGTGAGGAGGGATTCTCCCTGAATGGCACAGATGTGCTGATTTGCTCCTCCACTGGGTTCTGGAATGCCAGCCTGCCTACCTGCACAGGTATGCCAGTGGGGTGGACTGCCATGCTGCTGTCTCCAGGTTTAAGAGCAGTTTATGTTGTCCTGCTGCTTGTCCTGATAGGACTGGCTGTGGTGATTATAATGCGATTTAAGAAAAAAGGAAATACGATCATGGAACCGCATGCACCAGcatggggagacagagagaatcCAGCATTTGATTTTAAGACTTGATTTTTGCAGCAAATCATTTAAAACATACTGCACCCAAACACTTGCTGTTATTATATGAAACTTGGTAGTTGTTGTGGTATGATACTGGTAAGAAAAGAATACAGTAGGATTAGAGCTTCACTGGAACTGATTTAATGCACATTTTGCATGAAAACAGTTACCTTTTTGTTATTAAAGTCATAAAGCAaagtttgtttgctgcttttgcTGTGTCCTGCTTGTGTATTGCTTGATTGTCAATAAACTAGCAACAATTCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132089 lncRNA upstream 11440 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 159298 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 268392 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 310614 24211860 ~ 24213859 (+) True G97789
TU131962 lncRNA upstream 315183 24208229 ~ 24209290 (+) True G97788
TU132146 lncRNA downstream 106878 24638466 ~ 24642085 (+) True G97938
TU132243 lncRNA downstream 217440 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 253208 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 255743 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 301849 24833437 ~ 24835517 (+) False G98019
XM_039811884.1 mRNA upstream 115 24520634 ~ 24524358 (+) True LOC120565835
XM_039812307.1 mRNA upstream 4933 24515434 ~ 24519540 (+) True sele
XM_039810628.1 mRNA upstream 35722 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA upstream 35722 24481703 ~ 24488751 (+) False scyl3
XM_039810520.1 mRNA upstream 235784 24287104 ~ 24288689 (+) True foxd2
XM_039811159.1 mRNA downstream 58738 24590326 ~ 24627700 (+) True atf6
XM_039812148.1 mRNA downstream 115282 24646870 ~ 24652453 (+) False LOC120565979
XM_039812147.1 mRNA downstream 115283 24646871 ~ 24652453 (+) True LOC120565979
XM_039812149.1 mRNA downstream 115283 24646871 ~ 24652453 (+) False LOC120565979
XM_039812155.1 mRNA downstream 136794 24668382 ~ 24684071 (+) True fyco1a
TU131697 other upstream 1046655 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1202564 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1948271 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1949325 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1949549 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 250330 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 320713 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 336429 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1001237 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1198670 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile