RNA id: XM_039812322.1


Basic Information

Item Value
RNA id XM_039812322.1
length 1672
RNA type mRNA
GC content 0.39
exon number 3
gene id gng12b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30529968 ~ 30535873 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatacatttttaaatttaaagaatGTGATCTATCCCTCTGATCTCTCCCACCTATATCATGGGAAGGGCAAATCACAAAATACAGTCATAACTATTGTCCCAGTAATTCTTGACAAGCTATGGAGTTTTGTTGAGTCAAGTAATCATTGGCCTCTGTTTAAGTGTATACATATGTTGTTTTCATTAAGGTAATTTTCTGTACTACTGCAACAATAGGTGTTCCTAAAGGTTTGCCTTCTCAATCTGATTTCCCCAATGGCAGAATTCAAAAGTTATCTTAGTTGTCTTTCTCTCAAGAAATGCATTACTAACAGCAATATGATATGTCTATTATTTTGTTTACAGTCATAATAATTTAGCTTTACAAGATAGCTAAGAGTTTTCTCCCTATTTGCAGTTTAGGAGACACAATTAACATTTTCCCCTTTGGATGTAAAGTCTAAAATACACAATGTTCTTGCTATTTCAGGATGCTGATGAAGACTGTATGTCGCAGGACCTTGCTGAACAAAGGATGAACATCAAGACTAATAGGTTTGTGCACAGCTGTCCAAAAGCTGCATTGTCATCAAAAATGCAGAGCTCTAGTAGCATAGCTCAGGCCAGGCAGATGGTGCAGCAGATGAGGATAGAGGCCAGCATCGAGAGGATAAAGGTGTCCAAGGCTTTATCAGACCTGATGTGCTACTGTGGAGAACATGCCAAGAATGACCCGCTGCTCATGGGCATCCCCGCTTCAGAAAACCCTTTCAAGGACAAGAAGCCTTGCACTTTTTTGTAGGGGAATACCTGAACTCTTGCTGCTTTCCTTTGGATTtatgtggaataaaaaaaaaagctgatagTAATACTATTTACAACTTATCTTAAGGCCAGTGTTTCCCCCGTACCTTTTCGCATGCCTGCTAAAGTTCAAGGACTGTATTCCTCTCTGCTTTGCAGTCAGATAGCAGTTACAGCAAAGAATCTGCCTGAAGCTGTGGCCTAAAAGGAGCTGTGCCATCGATGGGAGAGTTCCTGACTCTCTAATTATCACAGCACGCATAAACAAGCCCCCTCAATCATTGGTCCAATCAGATTTAGGCTTTCAGCTTTCACCTCTTACTTTCATCAGGCTTGCTTCAGGAAACAGTTGTTGTAGGTTGTGTGCTACTGATAATGAGCACCAGAGATAATAATATCCTGTCGCCGGACGGGTTAACTGTGCTGTCCATTACATGGAGACAAATAGAAAGAGTGGAGGTCCATTGCCACTGATGCACAGCTCCTGCTCCTAATGTCACTATGTTCTGTCTGCAAAGCCTAGGCTTATTACTGTACAGGCAATTTGAAACCTGGTTACACCAGATGACAATGTTAGTTTGAAACATTCCATGTTAACAACTGCTCTAAAACTTCCTCTGATTTTATTATGAGAACCTATGACTGGCAGTGGGTAGCTGTGACTTTATTTACTTTGTGTTGGTGCTCATGCAAAACATAAGCAACTAATTTGAAATTTTACTAGCCATGGCCTTAATAATGAAATGATCTGGCTTCAACCTCACAACTACCTTTTAATCACATAAGTACTGTTGTCTTATATTGTGAAGTCTCATACTATAAGCTGTTGTGTGTatgacaaaatatttaaaaatgactCATGTTCAATAATAAATTGCATTTAGCTATA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134178 lncRNA upstream 898 30529609 ~ 30529820 (+) True G99494
TU134177 lncRNA upstream 1630 30528826 ~ 30529088 (+) True G99493
TU134171 lncRNA upstream 8652 30521645 ~ 30522066 (+) True G99488
TU134141 lncRNA upstream 67329 30462560 ~ 30463389 (+) True G99461
TU134066 lncRNA upstream 141079 30388821 ~ 30389639 (+) True G99406
TU134215 lncRNA downstream 144633 30680506 ~ 30680716 (+) True G99527
TU134216 lncRNA downstream 157766 30693639 ~ 30694005 (+) True G99528
TU134218 lncRNA downstream 184748 30720621 ~ 30720860 (+) True G99530
TU134269 lncRNA downstream 329027 30864900 ~ 30866452 (+) True G99567
TU134275 lncRNA downstream 333116 30868989 ~ 30869251 (+) True G99573
XM_039810360.1 mRNA upstream 44896 30481514 ~ 30485822 (+) True LOC120565046
XM_039810361.1 mRNA upstream 44896 30481514 ~ 30485822 (+) False LOC120565046
XM_039812227.1 mRNA upstream 49338 30477831 ~ 30481380 (+) True dr1
XM_039811703.1 mRNA upstream 69980 30450701 ~ 30460738 (+) True scinla
XM_039811702.1 mRNA upstream 101462 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039812426.1 mRNA downstream 5484 30541357 ~ 30559154 (+) False sec16b
XM_039812424.1 mRNA downstream 5486 30541359 ~ 30559154 (+) True sec16b
XM_039812367.1 mRNA downstream 191140 30727013 ~ 30794829 (+) False LOC120566104
XM_039812366.1 mRNA downstream 191142 30727015 ~ 30794829 (+) False LOC120566104
XM_039812365.1 mRNA downstream 191143 30727016 ~ 30794829 (+) True LOC120566104
TU134127 other upstream 101427 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 865628 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1756208 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2384393 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2446331 28027972 ~ 28084387 (+) False pip5k1ca
TU134237 other downstream 274645 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1086825 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1093943 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1097692 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 2339509 32875382 ~ 32878615 (+) False nlgn1

Expression Profile