RNA id: XM_039812332.1


Basic Information

Item Value
RNA id XM_039812332.1
length 1646
RNA type mRNA
GC content 0.53
exon number 1
gene id foxq1b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7580192 ~ 7581837 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGGAGATAGATCTGTATTCTGCTGCTCTAGACTGAGACGCAGGGTGCCTACAACGCTTACGACGAGTCtctacaacacacaaacacacagacatttctGCTGTCAGGACTGCTACACCTGCTCTGCTGCGCGTCTGAGACACTTAAAGGGagaagataatttttttggggggaaaaaatgaaaCTTGAAGTTTTCTCCGCGCACCACTTCGCACAGAAGCCGCTGGAGTTGTGCATGGACCCAGAGGGGGGAGTCCCGTCTCCTCTATCCGGAGACGAGCTCGGGTCGGACGGGGACTGCGTGGCCAACAGCCCGGCACCTGTCGCCCAGAGCGGCGACAGCAGCAAGGGGAAACCGTACACCCGCAGACCCAAACCCCCTTACTCCTACATCGCCCTCATCGCCATGGCCATCCGGGAGTCCAGCAGCGGCCGCCTCACTCTGGCAGAAATCAACGACTACCTGATGAAGAAGTTCCCGTTTTTCCGCGGCAGCTACACCGGCTGGAGGAACTCCGTGCGCCACAACCTGTCACTCAATGACTGCTTCCTCAAAGTTCTGCGGGACCCGTCCAGGCCCTGGGGCAAGGACAACTACTGGATGCTCAACCCGCACAGCGAGTACACCTTCGCTGACGGAGTGTTCCGCCGCAGGAGGAAGCGCATCGGCAAGAGGTCTGCTAAGGAGAGGGAGAGCCCGGACATCCTCGGCGAGGACACCCGCCTCCCTGTCCCGGAGGAGAGAGTGGGGGCCAAGTTCTCGAGCTCCTTCGCCATCGACAGCATCCTCAGCACACCCTTCATACGGAGGGAGGACAGCCACGTTGAGGCAGAAACCCACGCCCCCCGGATCTACTGGTCCCCAGGGGCCCACTTACTGCCTTACACTCTGAGCTATCCGCAGCACACGTACCTGTCAGAGGGTGCGTACAGCAGCACAGGGCCCAGCAGGGATGCACTCACATACCTCCAGCAGACAGCACCGGGCATGGTCGCACCTGAGGCCGGTCTCCACGTGCTCAACATGTCCAACAAGGCGCGAGGTTTCCATATAGACTCCTTGCTCTCATAAAGCACCCGGACTGCTGTCAGACTTGTATGTTTTGACCCATGATATGCACTTTTGTGACCGCTCTTAGCTTCCAGTGCTTTAGCTGTTTAACTGTTTGGGACTCTGTCTGTAGGCTACTGAACGTCATTCTGCAGTGAAACAAATCAAAGGACGTGTTGTCAATGTAAATCTAACTGTGTGGTGACACAGCAAATAGatgctgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttcatgcACCCATGGTTCATTGGTCATTTCCACTGTATGACGGCAACCAAGCGCcatgttaaaacataaaaaactattcatctatttatattttcatgttttgtatGACCTGCTGTATAAAATAGTGTTGTATATAAAAGAAATGTTGACTGAGCTGCTTTGAGAATGACGTGGCTGCACTAGAAACGCATGGAAATGCTCGATGTTTTCCTAAGATTGATTCATGCATGCCTGGtatttttatgaataaaaaacGTGAAACAATGGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126801 lncRNA upstream 54849 7524990 ~ 7525343 (+) True G93985
XR_005640327.1 lncRNA upstream 184914 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 252506 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 256766 7322066 ~ 7323426 (+) True G93932
TU126742 lncRNA upstream 258737 7318842 ~ 7321455 (+) True G93931
TU126854 lncRNA downstream 297082 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 298701 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 310387 7892224 ~ 7895718 (+) True LOC120565893
TU126892 lncRNA downstream 371578 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 409451 7991288 ~ 7991555 (+) True G94057
XM_039812533.1 mRNA upstream 156372 7415441 ~ 7423820 (+) True LOC120566212
XM_039812274.1 mRNA upstream 166500 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA upstream 166500 7398140 ~ 7413692 (+) False LOC120566053
XM_039811822.1 mRNA upstream 200848 7353848 ~ 7379344 (+) True LOC120565797
XM_039811515.1 mRNA upstream 294433 7263547 ~ 7285759 (+) True LOC120565613
XM_039812331.1 mRNA downstream 4304 7586141 ~ 7590299 (+) True foxf2b
XM_039810225.1 mRNA downstream 21623 7603460 ~ 7605630 (+) True LOC120564954
XM_039811558.1 mRNA downstream 280377 7862214 ~ 7867728 (+) True LOC120565646
XM_039810958.1 mRNA downstream 286754 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA downstream 286768 7868605 ~ 7873986 (+) False LOC120565295
TU126750 other upstream 229605 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1211838 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1366175 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1540073 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2867007 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 316835 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 655533 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 655533 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1565325 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1970459 9552296 ~ 9557568 (+) True G94239

Expression Profile