RNA id: XM_039812340.1


Basic Information

Item Value
RNA id XM_039812340.1
length 3923
RNA type mRNA
GC content 0.43
exon number 20
gene id brdt
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30201532 ~ 30244918 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTAGGccgatgtattttttttttacaggactGGTTCCATGTTTGTAGGCTATGCCATTGTCATTGCCATCATCAGGCCATCATAAGCGCAGGAAAACCTGTGATGAAAACTTGCTGCCAAGCATCAGACTGTTTCCCCCTTATGGCCTTTGGACAACACAATGTCTAATGTGAAAGTCTTACCCGCTGTGAGTGGAAATCCCCCTCCCCCAGAGGTCATAAATCCAAAGAGCCATGGACGTGTAACCAATCAGCTACAGTACCTGGAGAAGGTGGTGATCAAAGCTTTATGGGGACATAACTTTTCGTGGCCCTTTCGCCAGCCAGTTGATGCAGTGGCACTGCGTCTCCCAGATTATTATACAATTATCACAAAGCCTATGGATCTGAGCACTATTAAGAAGCGTCTTCAGAACAAATACTACTGGCAAGCACTTGAGTGTATACAAGACTTCAATGCCATGTTCACCAACTGTTATGTGTACAATCGGcCTGGAGATGACATTGTTTTTATGGCACAGACCCTGGAGAAGCTTTTTTTGCAGAAAGTGTCCCAAATGCCCAAGGAAGAGTGTGAAGTTACAGCAATCGCTACAAAGGAAACCTTGAAAGGGAGAAAGACGAATGCAGGTGCAATAAAGCAGAGATCCTTTGTGTCAGAAGTTGTTCTCCAGCAGACTGTGACCGTCATTCCACCTGATGTGCCTCAATTCATCCCACCCATCCAGCTCTCTGCACAAATTGATGCAACCattaaaaaaggttttaagaGGAAAGCAGACCCCTCAACCTGCACCACCTCAGTCATCAGCAGTAGTGAGGTATCCCAGGCTGAGGATCATTCAGCACCTAGGACATTATTCTCCAGGAGAGGCAGTGGAAGGCCCATCAAACCTCCAAAGAAAGACTTGCCTTCTTTTGAGGGCAAGAAGGTCAGACTGTCTGAGCAGCTCAGGTACTGTAGTGATATCCTGAAGGAGATGCTCTCAAAGAGACACTATGGATATGCATGGCCCTTTTATACCCCTGTTGATGCGGAGGCTTTAGGCTTGCACGACTACCATGACATCATCAAGCAGCCTATGGACCTGAGCACCATCAGGAAAAAAATTGATCAACGGGAGTATGCAATTGCAAAGGAATTTGCCGCTGATGTCAGATTGATGTTCTCCAACTGTTACAAATACAATCCACCTTCACATGAGGTTGTCTACATGGCAAGAAAACTCCAGGAGGTTTTTGAGGCCCGTTATTTGAAAGTTCCCCAAGAAGCGGAGGGTTTTTCTCTACCTCATCGGCGAGATGACAAGGGAAAAGGAGACGGAGTTCCAAATGTGTCAACCTCAGCAAGTTCTGAAAGTGAAAGCTCCTCAGAGGCTCAGAGTTCATCAGAAGAAGTGGCCATTCAGCTGGCCAATATAGAGGAGCGGTTGAAAGCTGTCAGTGATCAGCTGAAGAGACTAACTCAAGAGCCTCCGATGAAACCTAAGAAGAAAGACAagttgaaaaaggaaaaaagagccAAAGAAAAGGATATCGCTAGACTAAAGCAGAAATCCTTGGAATACAAATCTATTGTAGAAAAAATGGCCAACCGGAAAAGTTCTACTTTGCATGACAACAGACGCAATATTTATGGAGGACTTCTAAAGTGTGAGGATGGGGTCCCACCATTACCAATGACTTACCAGGAGAAAAAGCAGTTGAAATTGGACATCAACAAGCTGCCTGGTGACAAACTGGGCAAGTTGGTGAAGATCATTCATGCCAGGGAGTCCTGTCTACGAGATTCCACTCTCGAAGAGATTGAGGTTGACTTTGAAATGCTCAAGTCTTCCACACTGAGAGCCCTGCAGAGGTTTGTTGCAGCATGTCTGAGGAAATGCAACAAGAACGTTGGCAAAAAGAAGCTGGTAAAGCCAACAGTAGGAATGCAGACTGGGAAATCAAAGGATACCGGTACATCTCAGGTTGCCAGTAAAGAGAAGCAAttgattaagaaaaaaaaactattggCTAAACTCCTGCCGGCTCCTGACCCCAGCTGCCCTTCACACCTCAGTGAAAGCAGCAGCTCGTCATCCAGCTCTGACAGCGGCAGCTGTAGTAGTCTTTCTAGCACTTCTGATAGCAGTGACTCTCAATCAGTGCCAGAAACAAAGAAGCCAAAAAGTAAAGACTCTTGCCAAAAGGTTAAGACAAAGTCAAAGGTGACTCGTGCTACCCGTGGCAAGCAGATATTTGAGACAAAAGATTTGACAAAACCTTCAGTCAAGACTCGTCAGCCCCCTCTTGCTGTGCAGTCCTCGGTTGCAGAAACCAAAGGCTACCCAACACACCGAAATGCAGACAAGACGTGTGATGAGCTGACTTTATCACCTCCAGATTTGTCTGCCCTTTTATCCCCCATGGCATCTCCAGGAGTGTTGCTGGATTGGGCAGCCACCAGATTTGAGCAGGGCCCAGTGCTGTCCCCTATTAGAGACAGCCCACTGCAGTCCAAAGATGAGACCAGGTCCAATTACAGATGCCCTGAGGATTTTCCTGAAAGTCATCTGACTAACGTGCCTTACACCAACACAGCAAGTACATTTGCTGAAGAGGAAAAAGCCCAAATTCCCAAAAAGGAAATTGTTCTGAAAAATGCTGAGTCTTGGGCAAAGCTGGTGAGGCAGTCAGTCACTGCAGCTGCAGTTAAGTCCTCAAAGGAGAGCTTCCAGCAGTTCCGTAAGGTTGCCATAGAAAAAGAACGTGAAAAAGCACTGAAGAAGAAACTGATGGAAGACACCAAGGAGAGGGAGGCTCCTGAAAAGAGCAGTTTACTTGGTAAAGCAGAAACTAATTCACAACCTATTGAGGAAGATCCGGATTCACCAGAGAGCATTTGTACAGAAGCTACCCTAGATGCTCCTAAAGATGTTGAGCAACAAAAGTCTCCGATAGAAACAGAACCTTTAACAACACAGTCCTTGGTGGATAGGGAAAGAGAGATGGCCCGCAAAAAGGAGCAAGAACGTCGCAGGAGAGAGGCTaTGTCTGGTATTGACATGACTATGCAGCGGGACATCATGACTACATTTGAGCTTAACCTGGACTAAAAAGAAACTGGATTTACTTGAAAAAATAGCCCTCTGTGCAAGACTTGTCTTGTCTCAGTAAATAACTTGAGCTGTTGGTTTCTTTCTCTGGCCCAAAAGACAACTGCACATCAATCGTATTGTATGTAGAAAAATAACATGTTAATTGTGGGGAACAAATCCTAACAATTTAAATGTCTCTGCCCTTGAATTTGAAAAGGTTGGTAAATGTCTGCACTGATGCACTGTTGAATTTGAGATGATGGGGGTGACTCACTGTCAAAATTCAAACCTGAATCTAATCTTTTATGTAGGTTTTCACATTTGGATGAGTCCTCTTTCAGCTGACAGTTGTGTATGGAAAGCTAATTAATGCATCTATACACTGTAGTTAAAATTCCACCGTCTTGTTTGCTGTGTTGTTTAGTTCTTCTGTTATGTTATCCGATTTGATGAACCTTTACCACCGTGTTTCAGTTTATCCTGACTCAAATATACTAAATGTAGGGAAAATgggatttttttatgtttattacatgcacacatgacTTTTTCTTTAGAAAAAATTCTTGCACAAAAGTAAAttaacattttgaacaaaggTTGGTAGGTCCTTGTCAAAGTTTCCAATGTGGAATTGATGTTAATGATCTCAGCTCATTTGCTTACTTGAAAATACCATACACATGTTAACTGTACACGCACTTTACTTTGTTGTTCATACAGTTTTGGCTGTTCCAAAGTTGCTTTTGGAGACTATCAACATGTTCTGTATGTTAGTTTGTACAtgctaaataaataagaatttattttttattcaaaataaagCTATTTTCACCAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134013 lncRNA upstream 9692 30185707 ~ 30191840 (+) True G99368
TU134001 lncRNA upstream 160637 30039842 ~ 30040895 (+) True G99356
TU133977 lncRNA upstream 323411 29877872 ~ 29878121 (+) True G99338
TU133968 lncRNA upstream 426452 29774317 ~ 29775080 (+) True G99329
TU133966 lncRNA upstream 441166 29760043 ~ 29760366 (+) True G99327
TU134042 lncRNA downstream 42146 30287064 ~ 30288117 (+) True G99382
TU134036 lncRNA downstream 99411 30344329 ~ 30345174 (+) False G99379
TU134066 lncRNA downstream 143903 30388821 ~ 30389639 (+) True G99406
TU134141 lncRNA downstream 217642 30462560 ~ 30463389 (+) True G99461
TU134171 lncRNA downstream 276727 30521645 ~ 30522066 (+) True G99488
XM_039812172.1 mRNA upstream 428848 29763669 ~ 29772684 (+) True lrrc8db
XM_039811912.1 mRNA upstream 446123 29742393 ~ 29755409 (+) True lrrc8c
XM_039812314.1 mRNA upstream 765036 29422379 ~ 29436496 (+) True lmo4b
XM_039812235.1 mRNA upstream 828066 29352402 ~ 29373466 (+) False hs2st1b
XM_039812234.1 mRNA upstream 828066 29352403 ~ 29373466 (+) True hs2st1b
XM_039810148.1 mRNA downstream 886 30245804 ~ 30261307 (+) True ephx4
XM_039810386.1 mRNA downstream 18059 30262977 ~ 30311025 (+) False btbd8
XM_039810388.1 mRNA downstream 18093 30263011 ~ 30311025 (+) False btbd8
XM_039810389.1 mRNA downstream 18094 30263012 ~ 30311025 (+) True btbd8
XM_039810390.1 mRNA downstream 38027 30282945 ~ 30311025 (+) False btbd8
TU133929 other upstream 536442 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1427022 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2055207 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2117145 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 3405793 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 182585 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 565600 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1377780 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1384898 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1388647 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile