RNA id: XM_039812351.1


Basic Information

Item Value
RNA id XM_039812351.1
length 2381
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC120566096
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 35699825 ~ 35737010 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCCTTTTACAGTCAAAGTTTACTACTAATTGTGTTCAATTGAGTATTTTTGTAGTTCACATTTCATTCTGCCACACATCTTCAACTTACAGATATTGTAATACAATtattcagtattttttattttcctcagCCGTAGCTAATCATGGTGCGTCTTTCTTTCCTGTGTTCCACAAATGCAGCAAGTGGTCCAGGATGAATTCAGGCACCACGCTGcctgtgtatatatctatggctgCCTGCCGCAAAATCATCGACAACAGCAACAGAAATAATTATGGCCACAAATAAAGTGGTTATTGACGCCCCAAAGCTGGAGTCCAGTGGGGCAGCAAGGGCTGGAGACACCTCTAATAAAGTCCAGATATTACAGGTCCCAGCCAAATGTGGACCCATCGCTGCCTTGCAATCCCCAGCCACTGCTGCAGGAGGCTCAAAGGGTGACTGTGTCTCTACCCCCACACCTAAAGTCCTCCCCACTGGCCATGGCCCCCAACCTCCCTCCTGTATAGCTGCAGTGCGTCAGACTTCCTCCCCTTCTGTCATGGTGGTATCAAAGGTGGTCACCCCAGGACAAGTGACCGCTACCAGCCAACCACAGGTAACAAAAGCAGCTTTGAGCCAGGTGGCCCCCATGAACCAGACCCCCACCCCAGGACGGACAGTGGTGATAACTGTACCCAGGGCAGCAGGTGCACAGACAGTCACTGTGGCCCCTCGGCTGCCCCACGCTGCTTCCCCACAGCTCCCAGCCAATATCCAAATACCAGCAGGTATGATGTTGATCCGCAGCGACAGTGGTCAGCTGATGCTGGTATCCCAGCAGGCTTTGGCACAGGCTCAGCAGGGACTGAGAGGCGTTGGTGGTCAAGGGCCTAGAATACTGGTCCcgcagGGATCTGCAGCATCTGGAAATAAAAGTAATGAGAAGGTGACCGTGATCAGAATGGCAGCCCCTCCCAGTTTCCAGCCTGCACCagtccagaagaccgctgtggTAAAGGTGATTGGTGTGGCTCACAAACCAGCTGTAGTCCCGCCCCTCAGTGCTGCGTCTGAACAGGGGAGCCAGCATCGCATTCAGGCGGTCGTCACGGAAACCAAAAAGGAACCTGCAACCGCGATTAGTCAGGCGACCCTGGAAAGTGTGAAGAAGTGCAAGAACTTCCTGGTGACTCTGATCAAGCTGGCCTCCAGTGACTCCAGGTCCGCCAACATGGCCAACAATGTCAGAGGACTGGTCCGGAGTCTGCTGGAAGGGAAGCTAGAAGCGGAGGAGTTCACAGAACAGCTGTATCGTGAGTTGAAGTCGACTCCACAGCCCTGCTTGGTGCCTTTCCTCAAGAAAAGTCTTCCTGCAGTGCGCCGCCTTACTGCAGACCCCCAGTTATTTATCCAACAGGCTTCAGCCCGCAACCTCAGCACTCCGTCTTCCACCGTGAAGCAGTCCAGCGCCGACACAGGACAAAACCTCAATACCAACCAGCAGGTTAGCTACCAGCAGCCTCGAGGAGTGACTGTGAGAGCGACATCAGCCCAGTCCACAAACCACACGTATAAGAGCAGCAGACCCCCACCCAAACCCACAGTGGTCCCGTCAGGAACCCACTTCACCGGAACATTTTCAGTGAAGcagcctttcactcaggagCCACCTCGTTCTACCAAATTTGCATTCAGTTCAGGATCTTACAGAGAAGATGATGACATTAACGATGTCGCCTCCATGGCTGGAGTCAACCTGAGGGAGGAGAATGCCCAGATCTTGACCAGCGTAGTTGGCTCTGTGGTGCAGTCGTGTCACGACCAGCCCTTCCTCTCCCCTAACCCGGTGCTCAGCCGAATCCTCCGTACAGGACAGGCATTGGGAGTAACGGATGTCGCTCCAGAGGTGGTAGCTCTGGTTTCTCATGCCACGCAGGAGTGTCTCCGTGGGCTGCTGGAGAAGCTCAGTGTGATGGCAGAACACCGCAAGCCAGCCCTGAAGGAGGACCCGTGGCATGCCAAAGTGAGTGATGTACGCTCCCAGCTTCGCTTCCTGGAGGAAGTGGAGAGTttgaaaaagaagaggaaagatgaagaggagagagagagtttgctgcgTCTGGCCAGAAGTCGCTCCCACACTGAGgatccacagcagcagcagctcaagCAAAGAGccaaagagTTCCAACAAATAGAAGCagctcagctgcagcagagagaggCCAACCTCACGGCTCTGGCTGCCATCGGGCCTCGCAAGAAGAGACCCCTGGAGCAGACTGGAAGCCAGGGTACTTTGTAAGGGTGGCCAGGCTGCTGGTGTACATGTGTCCTCCTACATCGATGTGGACAGGCGCGGTGGTTTTGGTGAGCTGGGCTGGTGTGGGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135233 lncRNA upstream 15629 35681729 ~ 35684226 (+) True G100383
TU135182 lncRNA upstream 220245 35478671 ~ 35479610 (+) True G100337
TU135103 lncRNA upstream 822432 34874342 ~ 34877423 (+) True G100279
TU135083 lncRNA upstream 847337 34852313 ~ 34852518 (+) True G100259
TU135081 lncRNA upstream 850363 34849203 ~ 34849492 (+) True G100257
TU135332 lncRNA downstream 71157 35808167 ~ 35808391 (+) True G100453
TU135341 lncRNA downstream 124997 35862007 ~ 35862327 (+) True G100462
TU135375 lncRNA downstream 406868 36143878 ~ 36144088 (+) True G100492
TU135410 lncRNA downstream 552439 36289449 ~ 36289686 (+) True G100519
TU135414 lncRNA downstream 555016 36292026 ~ 36292243 (+) True G100523
XM_039812039.1 mRNA upstream 21426 35673360 ~ 35678429 (+) True ddx10
XM_039812479.1 mRNA upstream 222302 35468011 ~ 35477553 (+) True hyi
XM_039810431.1 mRNA upstream 1038186 34528568 ~ 34661669 (+) False arhgap39
XM_039810430.1 mRNA upstream 1041947 34528568 ~ 34657908 (+) True arhgap39
XM_039811945.1 mRNA upstream 1242899 34454383 ~ 34456956 (+) False LOC120565866
XM_039810201.1 mRNA downstream 478454 36215464 ~ 36234599 (+) True dsg2.1
XM_039810508.1 mRNA downstream 500842 36237852 ~ 36255480 (+) False LOC120565108
XM_039810509.1 mRNA downstream 511866 36248876 ~ 36284806 (+) True LOC120565108
XM_039810510.1 mRNA downstream 524929 36261939 ~ 36267815 (+) True LOC120565109
XM_039810505.1 mRNA downstream 561532 36298542 ~ 36327378 (+) True LOC120565107
TU134982 other upstream 1192303 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 1821524 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 2430695 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 2821240 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 4056409 31633565 ~ 31643446 (+) False LOC120564930
TU135393 other downstream 490077 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 736528 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 758474 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 795716 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 958427 36695437 ~ 36698869 (+) True G100671

Expression Profile