RNA id: XM_039812365.1


Basic Information

Item Value
RNA id XM_039812365.1
length 4755
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC120566104
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30727013 ~ 30794829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCTACTGTAGCCTGTATGAAAAAAGCAAGGGGATGGagtgaataaaataaatccacACTTATTATTTCTCACAGacacttttttgtaatttggtaGAACGAGGGGGTTTTGGATCACTGCGCAACATTACAAGAAAACGTGTCCTGGTTAATGTTAGTGCTATTAGAAACCAGCTGCCTATCTCTTTTTACGCACACCCTACTCCAGTGAAGGCAACGGCAGTTCAGATCAGATTTCACATTCAGCGCCGACCAGCTGagagagacagccagagagcAGGAGGGCTTGTATCTCCGCTTTCCCCTCTGATACCCCCGCTACAAAAAGCCGCTGCGAGGAACAACCGTTTGCGCGACGAAAATATTACACATCCGGGAATTTTcccctcttttttattttatgtatttttgcaGGATTTCAGCAGCGAGACCACCACAGAGAAGTAGATAGAGAAGCAGAAGAGATGGACGAGCAGACGAGGCTGATGCACTCTCACACGGGGGTAGGCATGGCAGGGCACCCCGGCCTGCCGCAGCATATGCAGGAAGGCACCGGAGGAACGGACGGCGACGGAAGAAAACAGGACATTGGAGACATTTTACAGCAAATTATGACCATCACGGATCAAAGTCTGGACGAAGCCCAAGCCAGGAAACATGCACTGAACTGCCATAGAATGAAGCCAGCTCTTTTCAATGTCTTGTGTGAAATCAAAGAAAAAACAGTGCTCAGTATCCGCGGCGCACAGGAGGAGGAGCCTCCGGATCCCCAGCTCATGCGCCTGGACAACATGCTGCTGGCAGAGGGCGTATCCGGTCCGGAAAAAGGCGGAGGttcggcggcagcagcagctgcagcagcagcctcaGGAGGAGTGGGGGCGGACAACTCTGCAGAGCACTCTGACTACAGGGCCAAACTGACCCAGATCAGACAGATCTACCATACAGAGCTGGAAAAGTACGAACAGGCATGTAACGAGTTCACCACCCACGTGATGAACCTGTTGCGTGAGCAGTCACGCACGCGGCCAATTTCGCCCAAAGAGATCGAGCGTATGGTGAACATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTTAAGCAGAGCACCTGCGAGGCTGTCATGATCCTGCGCTCCCGCTTCCTCGATGCCAGACGGAAAAGACGAAACTTCAACAAGCAGGCAACAGAGATCCTGAATGAGTATTTTTACTCACACCTCAGTAACCCCTACCCCAGCGAGGAGGCTAAAGAAGAGCTGGCAAAGAAGTGTGCCATCACAGTTGCCCAGGTTTCCAACTGGTTTGGGAATAAAAGAATCAGATACAAGAAAAACATTGGTAAGTTCCAAGAAGAAGCCAACATGTACGCTGCGAGAACTGCCGTGAATGCGGCTAATGCATCCTCACATGGAAGCCAAGCAAATTCACCCTCAACTCCAAACTCTGCAGGTTCTGCTGGCTCTTTTAACATGTCAAACTCCGGGGACTTGTTCATGAGTGTGCAGTCTCTCAATGGGGACTCGTACCAGGGGGCTCAGGTGGGAGCCAACGTGCAGTCACAGGTGGATACCCTTCGCCATGTTATCAGTCAGACAGGAGGATACAGTGAAGGACTCACAGCCAACCAGATGTACAGTCCGCAGGGCATCAATgCAAACGGTGGCTGGCAGGATGCTCCGACCCCCTCATCAGTGACTTCACCCACAGAAGGACCCGGAAGCGTTCACTCTGACACCTCCAACTGATCCTCGACCCCCCGTCACTCCGCCATCCTCTGCTTCCAACTTCTTCCACTACTACACCCCCAACCACATCTCCCAAAACCTTAGGTCAAACCATGTCGGGACTACAcgtgatgtactgtatgtagtcaCACGGCAGGACACAGTTGGGATGGGGGATGACATTTACGGACAAATATTTAACTTTTCCTATCTGGACTACTGCAGCACCGTTAGCAGCCTGCATAGGGGACTCATATTCACACTTCCACAGTTTGTACAGTTTCCACTTGATGTCCATGTTGCCTCTTTGTATTTCTCTTACATTATATATTCACACAGTAGGCACACAGTTAGCAGCATAATGCCCCACGTCTTGTAAATTGAAATGCTTCCACACTACCTCTATTCAAAATAACAACAGAGAAAACATAATTTCAAATGCTTCGGTTTTACaaatttttataattattgGAATTTTATTGTACAACACATCATGCCCTGTCATAACACATCTGTGCTCACACATTATGTTTATCTATTGTGCCAAAGTTCAACCCTGGAGGTGaattttgatacattttttttatgtaatgtcCTTCTATTTTTAATGCCATACATTGTGAAGTATTATTATGTTAGTCCAGTCAGTCCAGACTATTCAGCCTTGATATATAAAGTTTCAATTCAGAACTTCTACAACGACATACAAggcattatatattttattatgcagTACAGTAATGCAAAGAATTCACAATTTCTACGCAAGCAAGAGTTAATCTTCAGAACAATTGACCTGAAACACTAATTCGATGACGACATTAGCAGCAATTACGGCACGTCAATATGTATTAAAGCACAATAACACCTAATGATTGAACTCAAAAGGTAACATTTGTAAATGTCGAAGAGAAAACAATTTTAGGATTTAACTATAGGAGTCATATAAGAAAGAGAGTGTACATGATCAGACATAGTCAGTGTGTATCAGTGAGATAAATATAGCCAAATACTGCTGATAACCAAATCCAAAACAAAAATTGTAATTCAGATTTTAAGGTACCATGTTGTTGGGATTGAACACATTGCATGTATTTTCTCTGAATTCCCATTTCTTTCGTGAAATTATATGTGTGTGATAATCCTGAAAGCAGGATGTGACATTTTGTGCACAGATTACAGAAAATTATATTAGATGCTCAAATTAAATAATTCGTTACATGATAGAatttctttactttttcttttttttcttttaaaaaaggtgTGCAGGCAAAACAATAATTTTCTGTGCTCAAAATGTCCCATTGAATGCTTGGAATTGTGGCATAAATATAATTCTATATACAGTCCGTGCTGAAAGAAACTTGAGGTTACTTATCCCTTAACCCCTGTTCTCTGATAACATTAGGCATAATCTTTGAAAGAGAACTAGTGTTTGTATTCTCAGTATTCAAGAGTCCCATCacgttttgttttaaaatgaataaaaacaccACATCGATCAACACAAACCAATCCAAAATGGGAAATTAAATTTGTGACCTTTGTCGTatgtacagtatagtatgtggtcCAACGTGTATACATGATTACAATAGTCCTCATGAGATATCAGCATTTACATATTTTGATACCAAAAAAAGGCAGAATTTGTATCCTCTACATTGGGATCAGCTTTATTAacgttttctttttcctcttcttgtAGGATTTTATTATCTACGGTATTAGTGAGCATCCAATAATGCTCTAGTACTCTGTATTCTGTATTAAAAAATGCAGTTGGAATACAGTAGTGTTTatataaatttaaatttaaacagAAATGAATACCCTGATGGCACACAAATCCAGATAATATCTGGATATATTTTTGTCTCCATTTTGTgaataactctttttttttgttttcactggATATTATTTTGCCTTGCTACAGGGCTGTTTCTTTTGTATGCTATGCTACTTATATGTGAATTAGCTCAAGAATgctctatatacagtatgtagatATGCACCTTTACTCTTTTTTTGCATCTTTGAAATTTACACAGTAGCCATTTTAACACAGCCTGATGGAGTTCCTGTTGGATTTAAGGTGAAGTCCTTATTATATTTTGTGCTCAGACCACCGAAAGAAGCCTGTTTCCAAGATGGCTACTGTCTGAATGAAGGTGACGTGAAAGGTTGTGAACATTGCCTTCTGGCATTGTTTTTAGCTTAACTGAACCCTTAGGAAAACAAAATTCAGTCCTGAAATACCAATCAGCCACAATACAGCCTGAAAACCACAGGATTTTTCAACagttgtcagtgtgtttgtatttattaCACATGTATGAAATCGTGGTTGTTTCAGAACTACTGTCTCGAGGTCAACCACGGCATGATTACACCAAACAAACTAATTTGGATCATTCAGAGCGGCTCCTCCTCGACTTACCTGTTCAGTATTACAGTCTAGGGGCCGAGAACCATTGTGATACATAGAACCTCGACTTCAGTCGTGTCTTCTGAAGTCATTGGAGTGAATTGACAGCACCGGCCATGCAAGGCAAACACAAGGATTGATTTTGCACCCCTTGAAAAAACAGCTTAACTGTACTTTTCACATTGCCTGTCAAATATTATCAAAGCTTCATGTAATGATGCTTTTTagtttttgaatataaaaagagacatgaaaagaaaaatggacaatttgtaaaacataaaatgttttatttgttgcatgtctttttttctcaatAAAATAACGTACTGCAGTGTTTTGAATGTTAACTTCTTTTTTATAAGGATTTCAGAGTGAAATCGTAGAGCCTTTTTCTTGACCGGTTTTAACTTTTAAGATCTCTGCCTATGTAAAAAGGTATCGAATGAAAAACTATTGTCTTTTTAATTCCAATTCAAAACCCATTTTCTGTGGAGAAAAATAGCTGAAAGGTGTAGGTTTTATGGTCTCTTAATTTGTACTGGCAATGCGGATCCCAAATAAATAGTTTCTTTTGTTGCATAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134218 lncRNA upstream 6156 30720621 ~ 30720860 (+) True G99530
TU134216 lncRNA upstream 33011 30693639 ~ 30694005 (+) True G99528
TU134215 lncRNA upstream 46300 30680506 ~ 30680716 (+) True G99527
TU134178 lncRNA upstream 197196 30529609 ~ 30529820 (+) True G99494
TU134177 lncRNA upstream 197928 30528826 ~ 30529088 (+) True G99493
TU134269 lncRNA downstream 70071 30864900 ~ 30866452 (+) True G99567
TU134275 lncRNA downstream 74160 30868989 ~ 30869251 (+) True G99573
TU134278 lncRNA downstream 87549 30882378 ~ 30883266 (+) True G99576
TU134279 lncRNA downstream 89435 30884264 ~ 30885185 (+) True G99577
TU134280 lncRNA downstream 90856 30885685 ~ 30885971 (+) True G99578
XM_039812426.1 mRNA upstream 167862 30541357 ~ 30559154 (+) False sec16b
XM_039812424.1 mRNA upstream 167862 30541359 ~ 30559154 (+) True sec16b
XM_039812323.1 mRNA upstream 191143 30529968 ~ 30535873 (+) False gng12b
XM_039812322.1 mRNA upstream 191143 30530718 ~ 30535873 (+) True gng12b
XM_039810361.1 mRNA upstream 241194 30481514 ~ 30485822 (+) False LOC120565046
XM_039812378.1 mRNA downstream 29394 30824223 ~ 30829271 (+) True uck2a
XM_039812380.1 mRNA downstream 37972 30832801 ~ 30836627 (+) True magoh
XM_039812371.1 mRNA downstream 139079 30933908 ~ 30945625 (+) False akr1a1b
XM_039812373.1 mRNA downstream 139255 30934084 ~ 30945625 (+) False akr1a1b
XM_039812369.1 mRNA downstream 139269 30934098 ~ 30945625 (+) True akr1a1b
TU134127 other upstream 297725 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1061926 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1952506 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2580691 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2642629 28027972 ~ 28084387 (+) False pip5k1ca
TU134237 other downstream 15689 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 827869 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 834987 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 838736 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 2080553 32875382 ~ 32878615 (+) False nlgn1

Expression Profile