RNA id: XM_039812390.1



Basic Information


Item Value
RNA id XM_039812390.1
length 4009
RNA type mRNA
GC content 0.47
exon number 2
gene id lingo3a
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26097785 ~ 26135163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agagagcgcgcaACAGCACACATGAGCCCTATGAACAGCAGCCGGCTCCTCTTTCAAACCAACAGACACACAGTACGCTCTacatcccacacacacaaatgccagCACTCTCATGCACATGCACTCCAATAACGAGAGCACCGTCAGTCCGAGCTGCCTGCCGCTGCCGGTGGCAGCCCTCACCGATCCCCGAGACACAACGCTGGGAGTCCGCTGGGAGAGGAGCTCCTGCTGCCTTTCTGGCACAAAGCAGAGGAGAGCGGAGAGCCAGGGACTTCATTAGCGAGGCGGTAGATAATCCAACAGCGGTGCTCTgaggagaagagacagagaggagggaaggTGAGTGAATGCAGTCCAGTtcagctgctgttgctgctgctgctgctgctactgctgctgctgctgctgctggaggaggaagaagaagaggaggaggaagaagcatATAGTGTCCGGAGAAGCTGGAGGAACAACATTATCCCGCACGGAACCACAGTCAGAGCAGACGGCCAGCATTTGATCAGAGCACCTCCAGGCGTGCAGATGTTGATGGAGTCCTGTGCAAGTTCTAGTCCTGGGTGTCTGACGCAGTGATTCAGGAGCGGGACGAACCAGTGAAAAGGAGAGCCATGGGGGTGAGCCTGGGCCAGGATGTAGGCTGGCTCCTGCCTTTCCTGTTCTTGCTACTGATGGTCACAGTGTTACCCACGCAGGGTCAAGGATGTCCACAGCGTTGTGAGTGCATTTCAAAACTCAAGACTGTGTCCTGTTATGGTAGACGCCTGTCAGCACTGCCAGATGGCATCCCACTGGACACCAAGACCCTGGACCTAAGTGGGAATAAACTTCGCTGGGTAGAGCATGGGGACCTTCTTCCATATTCACGTCTTGAAAAGCTGGACCTGAGTGAGAACATTATCAGTGTCCTGGAACCGAATGCTTTTTCTAGTCTCCAGAACCTGCAGTCGCTTTCACTGAGGGGTAATCAATTGAAACTGGTCCCCATGGGGGCTTTCTCACGTCTCTCCAATCTAACCTCATTGGACCTCAGTGGGAATAAGATTGTAATTCTTTTGGACTTCACCTTCCAAGACCTGAAAAGTCTGAAAAACCTGGAAGTTGGAGACAATGATTTAGTTTATATTTCCAACAAGGCCTTTCTGGGTCTGGTTGGGTTGAGGGAGCTGACCATTGAGAGGTGCAACCTGACTTCTGTGTCCAGCCAGTCTTTGTCTTACCTGCATAACCTGGTGGCTCTGCATCTCCGCTACCTCAGTATCTCCACCTTAGAGGACCAGAACTTCCGTAAGCTGGGAAACCTGAGGGGCCTCGAGATCGATCACTGGCCCTTTTTGGAGCACATTTCCCCTCACAGCCTGCAGGGTCTAAACTTGTCTTGGCTGTCGATTACTCACACTAACATCACCTCTGTGCCCACCTCTGCCCTACGCAGTCTGGCTCACCTCACCAGCCTCAACCTCTCCTACAACCCTATCTCTGTGTTGGAGTCCTGGGCGCTGCGGGACCTTGTAAGGCTGAAGGAGCTGCATCTGGTCAACACAAATCTGGTGGCAGTGCAGCCGTATGCGTTGGGTGGCCTAAGGCAAATCAGCCTCCTTAACCTCTCCACTAACGGCCTGGTGTCCCTGGAAGAGGGAGCGTTTCAGTCTGTCAACACTCTGGAGACGCTGCGTTTGGACGGGAACCCTCTGGCCTGCGATTGCCGCTTGCTGTGGATCCTTCAGCGCAGGAAGACCCTCAATTTCGAAAGCGCCTCCCCAGTGTGTATGACACCCGTCGAGGTGCAGGGACGGGCTCTGAACGCTTTCTCTGACTCAGCTCTCTTTGATCACTTTACTTGCCAGAAGCCCAAAATCCGCAACAGGAAGCTACAGCAGGTAACTGCCCGCGAGGGGCAGGTTGTGTCATTCATTTGCAAAGCAGAAGGTGAGCCGACACCGGTGATATTCTGGATCTCTCCTCAACGCCGCCGCATCACAACAAAGAGTAGCGGCCGCCTAACTGTGTTACCAGAGGGCACATTAGAAATACGGTACGCCCAGGTAACAGACAGTGGAACCTACATCTGCATAGCCAGCAATGCTGGTGGAAATGACACCTATTTTGCCACGCTTACAGTCAGTGGGCTGCCACTAGATGCAGCCCTAATGGCAAACCGCACGTACTATGCTGGGGACCTTAATGACACAAATCTGAACGACACCAGAGTCTTCCTTAAGTTTACACTGGACCTCAAGACCATCCTTATATCCACAGCTATGGGCTGTATCATGTTCCTGGGGGTGGTTCTCTTCTGTTTCATTCTGCTCTTTGTGTGGAGTCGAGGGAGAGGGCAGCACAAGAACAATTTCTCAGTGGAGTATTCCTTCAGAAAGGTGGATGGACCCGCTGCCAGTGGAGGACAGGGTGGGGCTCGCAAGTTCAACATGAAAATGATTTGATTATTTGGATCTGTTTCTCTCATTGGTATTCTTTCCCTGATACTGTTTACAAGCAGTCAAACGCTAAAGGCACAGGAAACTGGAGTGGACCTTTGTGCTTGCAAAACATTAAATGCAGTTATTTATAGGAGGACATTTTATTGAGACAAGGTTTTGTTATCGAAACTACTATATATATGAGAAAAGGGAAATCTGCATGGatttgatatatttatattacttTGTTGTGTGTTCACATTATTGTGCAGTGGGAACCTGGATTATAAAGGTATAAAGATGTCTCCAAGTCTTGAATAAACTGTTAAAAGACCAAGCAACAAAATCACTCAGAGTCCCACCAGTCTTTAACCTTGACAAATCTCTTGCCAACTCCATCCTTCTTCCCTACAAGGAACTCTGTCCTCTTCATCTTTGAAGGACTTCACCTCTCTGCTCCATCTGAGGTGATTCAATCTCCAAACTCATGAATACATTATACCAGCGTGGTGCTCAATGAATGCCAAGGACTTGCCAATATGTATTTGAATAGCTCCAGCTATATACTGCATATTTAGACGTATTTACAGTCAGGACTTTAGAGCACTATTGTGACAAAAATATAGAggctttgctgttttttttgctgatgGTGGGTTTATACAGAATACGTTAGACACCAAGAGACACTGCAACACTGCCAATTTGACCGTAAAGCACCATGTAATATCAATGCAATGCTGTGGTAGAGAGAAGTGACTTCTCATTGGATACCACTACAAGTTGATCAAAGCcgttttaaacaaaaacaggacTCTACATGTTAAGCTACACTTAAAGGACCCAATGCACATTCGTGTGGTGACAAATCAGTACATGTGGATGCACAATTAGGTTTTCCATTGGTTATTCAGTACATACCTTACACGACTCTCTTGATCTGAAAAGAACTGTGTGTAAAAAGATGAACGCATGTACAATGTTGGCTTCCtaatttgtattatttgtaAATTGAGCATTTGTTGGGGTGCATTCATCCCAAAGTTGAATAGATCATATTGTaggatatatactgtataagatgtattatatattttgtaaacATTGATATTGAAATGCTTGTGGTTGTTTATAGTACTGTTGAGTGATCAATCCGATCTTTCTGTTCTACTGTAATTCTATTGTTAAAGTCTCTTTTTCAAATCATTGATATCCAGTCCACCCTATCACGCATCAGATCACTGAGTTCACACAACAGATCATGAAGGGCGTTCACATCAGGTTTcagttcactttttttttttcatgttttttgctGCGTAAGTGACAGTGGAGAGGCTTAAGCTGACCAGTGGGGGAAGGAGTTAAGTGGGTTCTAGATGTATTTGAGCAGGAAAAAATGCAATTGCGATAAAGAAACTTGCAGACTGGAACAAAGGTCATAATGAAACTGAGCCAGAGAGGAGACATCACGACTATAATACAAAGGGCTGGATGCTAACTTGTAACAATATAGGCCTCCTAAGATAGCTGTATAGCATTTTGTAAAAGTTTAAGCAGAATTGGTT

Function


GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU132705 lncRNA upstream 57938 26034761 ~ 26039847 (+) False oaz1a
TU132643 lncRNA upstream 172735 25884516 ~ 25925050 (+) True G98312
XR_005640280.1 lncRNA upstream 260038 25786331 ~ 25837747 (+) True LOC120565749
TU132636 lncRNA upstream 260405 25786325 ~ 25837380 (+) False LOC120565749
TU132603 lncRNA upstream 357236 25739131 ~ 25740549 (+) True G98280
TU132719 lncRNA downstream 74 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 114 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 56705 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 156937 26292100 ~ 26292440 (+) False zbtb7a
TU132802 lncRNA downstream 159376 26294539 ~ 26294993 (+) False zbtb7a
XM_039810190.1 mRNA upstream 44164 26050911 ~ 26053621 (+) True org
XM_039810881.1 mRNA upstream 57919 26034751 ~ 26039866 (+) True oaz1a
XM_039810879.1 mRNA upstream 66722 26027275 ~ 26031063 (+) True amh
XM_039810695.1 mRNA upstream 78414 25991507 ~ 26019371 (+) False dot1l
XM_039811849.1 mRNA downstream 8724 26143887 ~ 26189922 (+) True atp8b3
XM_039811850.1 mRNA downstream 39298 26174461 ~ 26189922 (+) False atp8b3
XM_039811431.1 mRNA downstream 109133 26244296 ~ 26257447 (+) True pias4a
XM_039811876.1 mRNA downstream 123141 26258304 ~ 26268496 (+) True map2k2a
XM_039810453.1 mRNA downstream 147889 26283052 ~ 26295382 (+) True zbtb7a
XR_005640198.1 other upstream 78414 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 365608 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 550696 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1223911 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 657524 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1892809 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2002106 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2637225 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3528470 29663633 ~ 29665090 (+) True G99297

Expression Profile


XM_039812390.1 Expression in all Baseline Samples

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XM_039812390.1 Expression in each Bioproject

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XM_039812390.1 Expression in each Sample
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