RNA id: XM_039812393.1


Basic Information

Item Value
RNA id XM_039812393.1
length 1973
RNA type mRNA
GC content 0.52
exon number 14
gene id mysm1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37108573 ~ 37114224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGCAGAGCTGAACGCTGTTTTCCTCCAgcgctctctccctccctccgttGTTTACGTTTATCCAACAACATGGAGGACGAGGTGGATGTTGATATTGAAGGAGACGAGTTTGAAAGCAGTGCTAGCGAGCCGAATGGAGGAGGTTTAGTCCAGGAGCAGTTCATACAGTCTGCGTGGAAGAGCAGCGCAGGGATACTGCCATGGGAGCTGGACAGCTCCATCAGCCCAGAGAACAGGGAGGTGATCGAGAGGATGCTGCTGGAGGAACAATACTACCTGACAGGTGAGGGGATTCCTGACAACATTTGGGAAAGTGATGTGAACAACGAGCCCAAAGTGAAGAAGTCTCCGGCCAAGACGTCGGCCTCTGCCTCAGGCTCCTCTTATCGTTGGTCCAAACAGGAGAAAGAACTGTTTGAGGAAGGACTGGCTCAGTTTGGTCGAAGGTGGACTAAGATTGCCAAGTTGGTGGGGAGCCGTTCTGTCATTCAGGTCAAGAGCTATGCCAGGCAGTATTTTAAACACAAGgcTAAATCAGAACCCAGAGCTGCAGCTCCCTCTGCAGGCCCTGCGCTGCACTTACAACCACCTCAGCCCACCTCCAGTCGTGCATCCTCTCTGACAAACGCTGTCCGCATAGAGAAGCTTTCCGATGACGAGAACGAGGAGGTAGACATCACAGATGACCTCAGCGACGACGGAGACGGTGATGACGAGCCGCAGGCTGTTCTGAAGACTGAGATTTGGGAGCCAGAGCAGCTAGCAGGCCCTGAGGTCCAGACAGACACGGAGGAACAGAAAGAGGCAGGTCTGACTGAGACAAGGGACCAGCCCAGCCACACCTCGCCGTTTCCACAAAGTCCCCGAACCTCATTGGCCCTACCTTCCTTAGAGAAGACCAGTGTGACCGGGCTGGGCGAGAAAAGCAACGAGAGAGTATCAGTCCCTCATAAAGACCTTCCAGCATGGGCTCAGACGGACTCGGAGCAAATGGCCGATGAGAACGAAGACCAGAGCTCCCAGTCTGATAGCTCAGCACAGACTGGTCCACTGGACGAGGCCTGTAGCGATGGCACAGATACTGCTGATAAGACTGAGCAGAGTGCAGCTGATAGACCAGAAGAAGaccaggaggaggaagaggaagatgatgaggaggaggaggaagaagaagaagaagaggaggagcttAAGCCCCCTGAACAGGAAATAGAGATGGACATGGAGACCACCACTGAGGATGAGAAACAAGCTATCCCAGAGTTCTTTGAGGGACGACCATCCAAGACTCCTGAAAGATACCTTAGGATCCGAAACTACATCCTGGATCaatgGATGAAGAGCAAGCCCAAGTACCTGAACAAGACGTCAGTCCGCCCTGGACTGAAGAACTGCGGAGACGTCAACTGCATTGGGAGGATTCACACCTACCTGGAGCTCATTGGAGCCATCAACTTCAACTGCGAGCAAGCGGTCTACAATCGCCCAAAGGTGATGGACCGCTCCAAGCACAAGGAGGGCAAAGATGTGCTTGAGGCCTACCAGCTCGCCCAGAGACTGCAGAGTATGCGGACCAGGAAGCGGCGCGTGCGGGACATATGGGGAAACTGGCGTGACTCTAAAGATTTGGAGGGACAGACGTATGAGCATCTCAGTGCTGAGGAGCTGGCTCTGCGGAGAGAAGAGATGAAGAAGCAGCCGAAACCCTGCAAGATCTCCAGATTCAGGGGGTCTTTTGATCCATTCCAGTTGATTCCCTGCAGGTCTTTTGGAGAGGATGTACAGGAACCATTCCAGGTTATTGTGTGTGCAGAGACTCTTCTCATAATGGACATGGTATGccaaacacacaaccacacacgcTGAATGTATTTTCCCTTAGGTAGCACACACGTTACGAGTTATTCGAGTTATGTTTTCAGTGTGTGATTATGTTGTTAATTCACTGATCTGTAAGGCAGGCCAATCAA

Function

GO: NA

KEGG:

id description
K11865 MYSM1; histone H2A deubiquitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135764 lncRNA upstream 5684 37100787 ~ 37102889 (+) True G100749
TU135762 lncRNA upstream 61455 37046901 ~ 37047118 (+) True G100747
TU135750 lncRNA upstream 65007 37039248 ~ 37043566 (+) True G100738
TU135718 lncRNA upstream 130411 36968687 ~ 36978162 (+) True G100726
TU135710 lncRNA upstream 150243 36937165 ~ 36958330 (+) False prrc2c
TU135880 lncRNA downstream 85013 37199237 ~ 37199455 (+) True G100847
TU135879 lncRNA downstream 351950 37466174 ~ 37475077 (+) True G100846
XR_005640318.1 lncRNA downstream 454860 37569084 ~ 37574819 (+) False LOC120566005
XR_005640317.1 lncRNA downstream 456328 37570552 ~ 37574819 (+) True LOC120566005
XR_005640319.1 lncRNA downstream 456332 37570556 ~ 37574819 (+) False LOC120566005
XM_039810338.1 mRNA upstream 1481 37047277 ~ 37107092 (+) True suco
XM_039810339.1 mRNA upstream 4316 37047277 ~ 37104257 (+) False suco
XM_039810340.1 mRNA upstream 4316 37047277 ~ 37104257 (+) False suco
XM_039810341.1 mRNA upstream 4678 37047277 ~ 37103895 (+) False suco
XM_039810307.1 mRNA upstream 78985 37005441 ~ 37029588 (+) True dnm3a
XM_039811820.1 mRNA downstream 13561 37127785 ~ 37141592 (+) True oma1
XM_039811470.1 mRNA downstream 42252 37156476 ~ 37488073 (+) False dab1a
XM_039811473.1 mRNA downstream 113370 37227594 ~ 37488073 (+) True dab1a
XM_039811472.1 mRNA downstream 113370 37227594 ~ 37488073 (+) False dab1a
XM_039811475.1 mRNA downstream 284776 37399000 ~ 37488138 (+) False dab1a
TU135631 other upstream 409704 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 574034 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 574034 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 633378 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 879999 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 17945 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 349690 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 1762987 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2346222 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2446898 39561122 ~ 39565955 (+) False reps2

Expression Profile