RNA id: XM_039812430.1


Basic Information

Item Value
RNA id XM_039812430.1
length 2018
RNA type mRNA
GC content 0.44
exon number 8
gene id cts12
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37883875 ~ 37889889 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTTTTTGGAAAGTTAGCTGTCAGGTGTTATGCTCACTTACAAACAGGTCATTGAAGGATTTACAATATTGCAGCTTTAGCTCTCTCTAAACGATAATAGAGGTATTGGAGCAGGCAAAGCATCTTATTTTTGTTGACTAATGTCCTTCTCAGGTGCTGGCATAAGTGTTGATTAAGGGATCCATTAAAGTATAGTGAAAACATGTAGGCTACTTATTGCTAAGCTTTATAAGGAAGGTTGACAGTGAGTCTGTTGCTGTGTAGCGGAGTATCTCTCAGACCATGGGAACAAAACAGACTCACATCCATGAAGTGCAGCCGGCCTACTTCCTGCTGCGAGCGGCGCTGctctctgtgctgctgtgcggCCCGCAGAGAGTGGCCTCGGACTCAGATGAAGTGGTCCAGACGGAGTGGGAGGTCTGGAAGAGCAGCTACGGCGTAGCTTACGAAGAAATGGACGACATGCAAAGGAGGGCCATCTGGGAGGAGAACAAGCACATGATCGAGAACAATAATCAAGGGTTTTTCATGGGGATGAGGCCGTTCACTATGGCCATGAATAAATATGGAGACCTGACGAGAAACGAGTACAAGGTTTTGCAAGGTGCCGCGATAGACTCCCAGTTTGTGAAGCGAGGGAAGACCGTCTCGGGCCGAAAGCTGCGTATCAACGCTAAAAAGTTAGATGCTGCGATTGTGGACTACAGGAACATGGGTTATGTCACTGAGGTGAAAGACCAGGGTTACTGTGGCTCGTGCTGGGCCTTCAGCACTACGGGAGCTATCGAGGGACAAATATACAAGAGGACAGGTCAGCTTGTATCGTTGAGTGAACAAAACCTGGTGGACTGCTCCAGATCGTATGGTACCTACGGCTGCAGTGGTGCCTGGATGGGCAACGCCTATGACTATGTGGTCAACAACGGGCTGCAGTCAACAAACACCTACCCATACACCTCAGTGGACACCCAGCCCTGTTACTACGACAGCAGACTTGCAGTTGCCCATATCAAAGACTACAGGTTCCTGCCCAAAGGGGATGAGCAGGCTCTGGCTGATGCCGTGGCAACTATTGGTCCAATCACAGTAGCTCTTGATGCAGATCATTCCAGCTTCCTGTTCTACAGCTCAGgaatATACGATGAGCCAGCCTGTAACTCTAACAATCTGAGTCACGCGGTGCTGCTGGTCGGCTACGGTTCTGAAGGAGGCCAAGACTACTGGATCATCAAAAACAGTTGGGGAAGCAGTTGGGGTGAAGGCGGCTACATGCGAATGGTCCGAGATGGCAGAAACACTTGTGGCATCGCGAGCTATGCTTTGTACCCTATTCTATGATTCTGATAAGATGCTTCAGTCGTGTGTTAATGCTGAACTCTTTCACTGCTGTCAGTGGGTCTCGGAAAACAACATCAGCCATTGCTTTAACAGCCCATATCATCTCTAAAACACTCCTGTCATCCATATTTTCTAAACCTTTCTGACACTGTATACACGTTTTGAGCTCACATGAACCTTTGACAGTgaacactttgcttctctcaggGATGTAGTGCACACACCAACCTGTGGCTAGAAATACTGTTAGCCTTCCTAAAGTTTTATTGATTAGTCTAACTCAccaaatacatataaaaaaaccTGCAATTTAACTAACTGAAAGTGAAACTATGAACAGAAGTAAAAACACGTTCTTCCACTTTCACATGAAAAAGGGGAATGTGGAAGTAATAACACACTATTGGGATTGTGCTGTTACAATTTTATGGTGGTTaattttagcaaatgttagcaaacTTGCTGTATAATAGACATTACTTAGTCAGTTCACTGACTTGGGACTTGTGAAATTAACTCACAACTAACACAACAATAACTTGAATATGTTTGAGACAGAACAAATAATATGGTTTCTTTGTATTTTCAATGCAAATAAatgtttctgcattttttttctaccaTTATAAACAATATTTTATACCTAATGGATAAACTGAAATGTTTTGACTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136018 lncRNA upstream 10140 37871456 ~ 37873735 (+) True G100963
TU136010 lncRNA upstream 44344 37838902 ~ 37839531 (+) True G100956
TU135983 lncRNA upstream 66118 37817373 ~ 37817757 (+) True G100940
TU135981 lncRNA upstream 69835 37813783 ~ 37814040 (+) True G100938
XR_005640175.1 lncRNA upstream 70465 37809268 ~ 37813410 (+) True LOC120565000
TU136035 lncRNA downstream 66715 37956604 ~ 37973191 (+) True G100978
TU136134 lncRNA downstream 108566 37998455 ~ 37998703 (+) True G101066
XR_005640176.1 lncRNA downstream 123300 38013189 ~ 38015274 (+) True LOC120565003
XR_005640177.1 lncRNA downstream 123300 38013189 ~ 38015274 (+) False LOC120565003
XR_005640178.1 lncRNA downstream 123300 38013189 ~ 38015274 (+) False LOC120565003
XM_039812439.1 mRNA upstream 29516 37850073 ~ 37854359 (+) False LOC120566157
XM_039812438.1 mRNA upstream 29524 37850075 ~ 37854351 (+) True LOC120566157
XM_039812437.1 mRNA upstream 34275 37843726 ~ 37849600 (+) False LOC120566156
XM_039812435.1 mRNA upstream 34275 37843729 ~ 37849600 (+) True LOC120566156
XM_039812436.1 mRNA upstream 34275 37843733 ~ 37849600 (+) False LOC120566156
XM_039812428.1 mRNA downstream 403 37890292 ~ 37915047 (+) True lama3
XM_039811591.1 mRNA downstream 61269 37951158 ~ 37990276 (+) False impact
XM_039811590.1 mRNA downstream 61272 37951161 ~ 37990276 (+) True impact
XM_039811589.1 mRNA downstream 61273 37951162 ~ 37990276 (+) False impact
XM_039811592.1 mRNA downstream 93445 37983334 ~ 37984742 (+) True LOC120565667
TU135875 other upstream 393803 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 751570 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1185006 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1349336 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 987322 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1570557 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1671233 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2625204 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3335202 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile