RNA id: XM_039812446.1


Basic Information

Item Value
RNA id XM_039812446.1
length 1304
RNA type mRNA
GC content 0.44
exon number 5
gene id lsm4
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15379515 ~ 15382779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCCATGATTACACACCACAACGCCGGAAACTCATTagaagaagacgaagaagaaCAGTATCTACTAGCTAGGTGGCAAAATCGTGTCAGTGAAGGGCCAAGACAGCAAGTGAGACATAAAATCATAAAGCTATTCTATCACAATGCTTCCACTATCTCTGCTGAAGACTGCCCAGAACCATCCTATGcTGGTGGAGCTGAAGAACGGAGAGACGTACAATGGTCACCTGGTCAGCTGTGACAACTGGATGAACATCAACCTGAGAGAAGTCATCTGCACCTCGAGGgatggagataagttctggagGATGCCTGAGTGCTACATCAGAGGAAGCACCATCAAATACCTGCGAATCCCCGACGAGATCATCGATATGGTGAAGGAGGAGGTGGTGTCGAAGGGCCGTGGACGTGGAGGCACCCAGCAGAACAAACAGCAGGgcaaaggaagaggaggaggagccggCCGCGgTCTGTTTGGCGGTCGTGGCAGAGGAATGACTGGTCCTGGTCggggccagcagcagcagcagcagcagcagcagctgcagcagcaggataaGAAACCGGGCAAACCACAGGGAATGAAGAACCAGCACTAACATTACACCTTCAACAACACATCCTGTCAATCAGAGTAATTTCTCCTTCAATACATGAAGATAAAATTGACTCTCTGGTGTTTCCTTCTGCTGTGATGTTTTGTCAGGACAGACCATTGCAGAAATCACACCGGGAGACGTTAAGAGAAGCTGTGCTTTTGCactgaattttgttttttagcATCTGTAAGTTGgtattaacactttttttagtATGACCATGTACCAGTGTATCAGTCAGAGCTGACAGACTCCTTCTTTAGAATCATTCATCATAATATGTCATCACAACTTTGCAAGAACATTTTGTATCATAAATCACATTGTATTATCCAAGAACAGTTTCTTGTCAGTTGGTACACTGGGATGAggttttttagttttagttattatttttgtcatttggtCTCCTCAGGTGTAGTCTTCATGGTAAAGAAACTACCTAGCCCCAACTTCTGTtgcatgaatattttttttaacttgctctttatttttgtgttgtttgtgatgTTCTGTGGTTTGTCTGCTGCGCCGTATGGTCCGATCATGGCAGGTAGACCAGTAGACTGGCAGTCGGGACAAGAAATCAGTCCCTGAAAATTTACACTTTTGTTAAAGCATTTGTAAGATGACACATTATGATCATTAGGatttccagaaaaaaaaaagattctcatATTCTTAAGTCTGAAATGGATAA

Function

GO: NA

KEGG:

id description
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129007 lncRNA upstream 82322 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 111330 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 111330 15231371 ~ 15268185 (+) True LOC120565370
TU128812 lncRNA upstream 447434 14930512 ~ 14932081 (+) True G95496
TU129053 lncRNA downstream 5219 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 91815 15474594 ~ 15478157 (+) True G95710
TU129122 lncRNA downstream 246190 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 250134 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 251719 15634498 ~ 15635947 (+) True G95731
XM_039811369.1 mRNA upstream 28922 15343666 ~ 15350593 (+) True ddx49
XM_039811377.1 mRNA upstream 83835 15293595 ~ 15295680 (+) True uba52
XM_039811131.1 mRNA upstream 225938 15027011 ~ 15153577 (+) False rabgap1l
XM_039812466.1 mRNA downstream 87868 15470647 ~ 15472763 (+) True LOC120566177
XM_039812071.1 mRNA downstream 115247 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA downstream 115253 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA downstream 115259 15498038 ~ 15505221 (+) True mpv17l2
XM_039811900.1 mRNA downstream 124078 15506857 ~ 15512275 (+) True LOC120565844
XR_005640328.1 other upstream 462909 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 465482 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 758102 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1996771 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2159143 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 937715 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2472858 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2483769 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2485887 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2488931 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile