RNA id: XM_039812449.1


Basic Information

Item Value
RNA id XM_039812449.1
length 2867
RNA type mRNA
GC content 0.48
exon number 2
gene id s1pr3a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24133664 ~ 24137514 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagagagcgGCTCGGTCCGAGCTGGAGGGAGTCCCAGTGTGGAGAGGACGCCACACCGATGAAGTTCAGGACGCAACACTAAGTGGATGTTTTGAGGCAAATACTTCCGCGATTGGAAACTTTTATACGGGCGAGGACAAAGTATGGACTTTGACTTCACGTCGAAGATCATCCATTTTTTGGCAATCACGTATTTTTGCACGAGCGCATCGTTACGCAGGAGAGAATCTTACCTTCCAAGTAGCTGCAAATCTCGCCACACCGGGGATGTAGATGAGACCAGAAACTCCAACAGGTCCTTCAGGAGGCTCTAAATAAGTTTGAGCTCCTCTGCATTTGATTGGCAGGTCCTTCAGGAGGCTCTAAGATGCCAGTTGTGACCCTGCCTGGCTGAGCAGCCTCGCCACCTTCTGCTGTCCAGTGCTGTGGCGCCCTCTGCTGTGTGACCCGAGGAAGGCCAGACGGGGCAGGCAGTATGGGGAACATACTGGAGGAGGGGATGAACACTGTCATCGTCAACCACTACAACCACTCAGGGAAGTGGGACCGGCCTCGCAGCAACGGGGCCTGTAAGATGGCCGTGCTGCTCTTCATCTGCGTGCTGATTGTTCTGGAGAACGTTACGGTCCTGCTCGCTCTCTGGAGGAACAAGCGCTTCCACAGCCGTATGTACTTCCTCATTGGAAACCTGGCGCTGTCAGACCTGCTGGCTGGTGTGGCCTACGTGGTCAACATCTTTACCTCAGGAGACAACACCTACTTCCTGACACCAGTGCAGTGGCTGGCCAGAGAAGGGAGCATGTTTGTGGCCCTCAGTGCATCCACGTTCAGCCTCCTGGCCATTGGGATCGAGAGGCACATGACTATGGTGCGTTTGCGTCCGTGTGAGACAGCAGGTCGGGGGAGACTTCTAGGACTGCTGGCAGCCTGCTGGCTTGTGTCAGTGCTGCTCAGTGCCCTGCCCAGCCTGGGCTGGAACTGCCTGGACAATATGGCCTCCTGCTCCACAGTGTTGCCGCTCTACGCTAAGAGTTATGTGGCCTTCTGCATCAGTGTGTTCAGCGCCCTGTTGGTGGCCATTATCATCCTCTACATCAGGATCTACCGCCTGGTGACCTCTAGCGGCCGCAGGGTGAGCAGCCGGCCTTCAGAGCGCTCACTGGCTTTATTGCGGACAGTGGTTATTGTTCTTGGAGTGTTTGTCATGTGCTGGACccccctcttcctcctgctgctgctggatgtTGGTTGCAGCCCAGATAAGTGCCCTGTGCTCTACCAGGTGGACTGGTTTATAGCCCTGGCTGTGCTTAATTCTGCCCTCAATCCTCTGATATACACTCTGTCCAGCAGGGAGATGAGGGCGGCTTTCTTTAGGCTGCTGTGCTGCTGTCAGACCAGCATGGACAACACTGGGACTCCTGTGGTGGGCAACCCCCACCTGGGCACAGTCATACCCACAGCGGAGAACAGCAAAACCAGTGGAGGAGTGGGCAGTGGGGctggcaagtccacactgaACAGAGGGAAGGTTCCCACACCTATCAACTCTGACAAGCATGGAGATCCCTCAGCCACTGCTGTGCCCCATCCCTCTGGACCTGCAGACCTGCTCTCAGCTGTGCTGGTGAAGGCGGGGGCGCTGCCGCCCCTCGGCAAGTTCTGAATGAAAGCACCTTAAAGAGGCCTAACAGTGGCACAGAAGTAAACATAGAACTGAACAGTCTCGCTATCGGCCACTTTTTGTTTATGCACTGTGGATAGGATGAAGTAATGTTGGAACCACATAAATGCAGATTGAAGTACAATCAGTCATTTAAAGCCACTATTTACAACAACTCAATATTATTACAACACCAGAGTAAATTATATGTTTGTCTTACACAATGATTAATGTTCAATATTTCACAGTTCAAAACTATGAAATACAATAGGACAGTTTCACGGACATGGATTAAACCGAGGCCCAAATGAAATCTCTTGTCTTAATTCATGTCTGGGAAACTAGTCTTGGTAATGCTTAAAAAACAACAGAGTATAATTAACTTTATTAGTTTTGTGTCTGTCGAGGTGTTTATTTTACTGTGTCATTACAAGCAGAAGGATCAGATTAGGGAACTTTTATTGCATGTGCTATATGCAAGTACTCTTAAAACACCTGCAATTTCCATCACAACTTTGCTTGGTAAACTATTTATTTTCTGTGAAAACATTTGCCATCTTAATACTATTGGTATACTTGTTTGGTATACTTAGTGTGCATACAAAACCATCATGGTACTAGGACTTAATTATTaattttgttatgatttgagaTGCActgtgagagaaaactagaccaAATATTTGTGAGACTAGCGGCCTCATGAGGCTGTGATGCTCAATACACACCAGAAGACAAAAGTGTGGGAATCATTAAAAATGGAGGGACAGAATTGCTACAGAATTGCTATTATTAAATTTGTGCCAATAGTGGGCAAGAGTGAAAACAATTTGCCCTGACGGTGGTTTTACAGTAAAAGCAATGTAAAATGTATAATCTAATTAGTAGGGTTCAACTTCTGTACAGTGGCCATTTTTGGCCATTTCTGGCTCAGCTCTACATTACCAGACCTGTCTCACTTTTCATTGGTCTATTCCGTCAGTATCAGCTGAATTAGTGTAGATAATAACTACACTCATTTTTGCTTCTCATCAGCCCATCTAGAAACCACTCACACATCAACTAACCACTAGTGAATATGAGTGTTGGATGTGAATTATTTAATGATGGTAGACTGTAAATGACATTTCTGTCTATAGGGTGGTGTAGTGCCTGATACCATTATATagcaaataaaattaaattctATTCActtttatgaga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131884 lncRNA upstream 42345 24090543 ~ 24091319 (+) True G97728
TU131850 lncRNA upstream 133442 23998401 ~ 24000222 (+) True G97702
TU131849 lncRNA upstream 133639 23998401 ~ 24000025 (+) False G97702
TU131851 lncRNA upstream 133710 23998401 ~ 23999954 (+) False G97702
TU131820 lncRNA upstream 420201 23712097 ~ 23713463 (+) True G97679
TU131961 lncRNA downstream 66851 24204365 ~ 24208101 (+) False cks2
TU131962 lncRNA downstream 70715 24208229 ~ 24209290 (+) True G97788
TU131964 lncRNA downstream 74346 24211860 ~ 24213859 (+) True G97789
TU131983 lncRNA downstream 116956 24254470 ~ 24256081 (+) True G97807
XR_005640189.1 lncRNA downstream 172095 24309609 ~ 24365175 (+) True LOC120565067
XM_039810385.1 mRNA upstream 135280 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA upstream 135280 23914092 ~ 23998384 (+) False tle2b
XM_039810384.1 mRNA upstream 135280 23914092 ~ 23998384 (+) False tle2b
XM_039810383.1 mRNA upstream 135280 23914092 ~ 23998384 (+) False tle2b
XM_039811020.1 mRNA upstream 253498 23836670 ~ 23880166 (+) False tle5
XM_039811047.1 mRNA downstream 30844 24168358 ~ 24183028 (+) True ankrd24
XM_039811050.1 mRNA downstream 66827 24204341 ~ 24208141 (+) True cks2
XM_039810519.1 mRNA downstream 140882 24278396 ~ 24281064 (+) True foxe3
XM_039810520.1 mRNA downstream 149590 24287104 ~ 24288689 (+) True foxd2
XM_039810628.1 mRNA downstream 344189 24481703 ~ 24488751 (+) True scyl3
TU131697 other upstream 655846 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 811755 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1557462 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1558516 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1558740 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 644404 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 714787 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 730503 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1395311 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1592744 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile