RNA id: XM_039812466.1


Basic Information

Item Value
RNA id XM_039812466.1
length 2117
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC120566177
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15470647 ~ 15472763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCAGTAGCCTACTCAGATCCTGCTCGAGAACATACGTCTGGCAACGGTTTcagtaaagtaggctattaGTAGGCTATTAGACATATCAATTAAAGAGATATTTTACACTACTGCTGTTTATTTCTGTGAGGTTATGGGTAAGGCACCACTGTGAGGGAGTGTCGAGCAGTAACGTTAGGACTTGTCGTTTTATTATCCACGGAAATAATGATGAAGAAGGATATTATTAACTCGAGCCTGGCGGACGAGGCAGACCTCAAATCTCATCTCCGCGACGCCGAGAGCATCCTCAGCTCTCCGGACCTGGGGCTGCTCAAACTGGCATCCCCGGAGCTGGAGAGGCTTATCATCCAGTCCAACGGTATGGTTACTACGACACCGACAAGCCCCCAGTTCCTCTACCCGAAGACGATAACGGACGAGCAGGAGTTCGCTGAGGGCTTTGTGAAGGCGTTGGAGGACTTGCACAAGCAGAACCAGCTGAACGGAGCCGGGCAGACGAACAGCAGCCTGGATCTGGGCACTAACATCGCCCCGGTCGCCATCCAGCCGGATCTGCCGGTGTATACGAACTTGAACAGTTACGGTATCGGGCCAATGGAAACCACTGTCAACTACTCCACGGACACAGTCCCTTTCCCGCCTCCTCCTTCGCATCTTTTGGGGACAGCCCCGCCGGAGCTGTCTCGGGTCCAGCCGCCGAAGGAGGAGCCTCAGACGGTCCCCGACGTTCAGAGCTTCAGGGAGAGCCCGCCGCTGTCTCCCATCGACAACGACTCACAGGAGCACATGAAAGCCGAGAGGAAGAGGCTCAGGAACCGGATTGCAGCCTCCAAGTGTCGGATGCGCAAACTGGAGCGGATCTCGAGGCTGGAGGACAAGGTCAAATCGCTGAAAAGCCACAACACCGATCTGGCCTCAACGGCTAGCCTGCTAAGGGATCAAGTGGCCCAGCTGAAACAGAGAGTCCTCAACCATGTCAACAGCGGCTGCCAGCTTCTGCCACACGAAGTGCAGGTGCACTAGTCGGAAGGACAGACCTGCATTTGGGCTACTGACCAGCATATAAGCTTCATGGACTTTCTTAATGTTGGTTTTTCTGTATGTAGCGTAGCCCAGATGTGTGCTGTTCCCAGTGGAAATAATGCAGGCCATAGGCCTATAGGCCAAATGTAGGCCTATTAATAATTGGTTGATTGATTTGAGCATCGGCAAGATGTAAACAATAGGGTAGAACACAATTCGAGATAAAGTGTGATAATGAGACTCTTCAGTTGTAATCGGTCAACAAATTAGACATTTTAATTCGTAAAGTAATTTCCAGGATCCACATTCGCCTCCACCCAATGGAGAGCACAAATATAGTCCTATTAATCAAgggattttaaatgttttttttttttttttttgatttatgCCGAAATGAAGAGCGTTTGCCTTTTAATATGGTCGATGTTTGAAATCCTGTTCTACCTCGTATATTTTACTGATGAACAAGGCTGTTTCTTTTAATGGACTTTGGCTTTGGGCTTTCCTGATGAGAGAAAGAGGCACTTATTGGTTCTATGTGCTCAACTTTAATGACAGAAAGCAAAAAATTGGTTTTTTTCCCTGTAAAAATGTTTATAGACTTGCAGTGTCTATATAAAGTTTCAAACATGGACCAAACAGATTTACAATATTTCTACAAACGTAGcctaatattaatataatatttatgacACAGATACCATTAATATATTAGGAAGTGGCTGTAAGAAAAAATGCACATACACCCACATTTAATATGTAAAAGATGACCTAGCCTAGACTATttaccatttatttatgtaagaAACAATTTGCATGATGTTTACATACTCGAATGTTGCCCACAGCTGGTTGTCAAAGGGTGCAATTCATCAGTGTTTATAATCTTTACTCTTTACAAACACatgttttatctattttttactCTACTGTGTCCCTATTTCATTGTGTTCTTATTTTAATGTGAAGAGGCGTAACCTTTTTGTTGCACTGACTGTTGCTGCCAACTCAAGCCTACAGTTGTTTGGCTGTATGCTGCTTTGTTCTGAATTAAATGCTGCTCGGCAATAAACGCTGTTTCCTCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04449 JUND; transcription factor jun-D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129053 lncRNA upstream 81505 15387998 ~ 15389142 (+) True G95681
TU129007 lncRNA upstream 173454 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 202462 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 202462 15231371 ~ 15268185 (+) True LOC120565370
TU128812 lncRNA upstream 538566 14930512 ~ 14932081 (+) True G95496
TU129093 lncRNA downstream 1831 15474594 ~ 15478157 (+) True G95710
TU129122 lncRNA downstream 156206 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 160150 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 161735 15634498 ~ 15635947 (+) True G95731
TU129130 lncRNA downstream 166989 15639752 ~ 15646044 (+) True G95735
XM_039812446.1 mRNA upstream 87868 15379515 ~ 15382779 (+) True lsm4
XM_039811369.1 mRNA upstream 120054 15343666 ~ 15350593 (+) True ddx49
XM_039811377.1 mRNA upstream 174967 15293595 ~ 15295680 (+) True uba52
XM_039811132.1 mRNA upstream 317070 15127592 ~ 15153577 (+) False rabgap1l
XM_039811133.1 mRNA upstream 317070 15135829 ~ 15153577 (+) False rabgap1l
XM_039812071.1 mRNA downstream 25263 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA downstream 25269 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA downstream 25275 15498038 ~ 15505221 (+) True mpv17l2
XM_039811900.1 mRNA downstream 34094 15506857 ~ 15512275 (+) True LOC120565844
XM_039810132.1 mRNA downstream 40388 15513151 ~ 15522405 (+) True LOC120564879
XR_005640328.1 other upstream 554041 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 556614 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 849234 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2087903 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2250275 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 847731 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2382874 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2393785 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2395903 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2398947 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile