RNA id: XM_039812479.1


Basic Information

Item Value
RNA id XM_039812479.1
length 1023
RNA type mRNA
GC content 0.51
exon number 7
gene id hyi
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 35468011 ~ 35477553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGCTACCAGTCATGTGACAATAACAAAACTCTCCGTCAGGTCAGTTCTattgatattttaaaaataaaactagttGTACAAAGGACACATATGGAAATCAATATAGCTACAAGAATAATCTACAGTTTTGTTTTGGAGGTGGAAGTATCGTTTTCCGCTAACATTGCTAACTGCGGTTAGCTTCATGCCGCTCTCCCCCCGGCTGTTTTCGGGGTAAAAGTGCAGccagcacacagacacgcacggtCATTGGCCTCTGCAGGTAAACCGGGGATGGCTCCGCTGAGGTTCTGTGCGAATATTTCCTGGCTGTTCACGGAGCTTCCAGACTTCAGTCAGAGGATATACGCGGCTGCCTCGGCCGGCTTTCAGGCGGTGGAGGCCGCCTGGCTCTACGACTGCGACCTGCCGGAGCTCCAGAGAGCCAGAGAGGCTACAGGAGTGGAGGTGGTCCTCATCAACACCCCGCCCGGAGATGTAAAGGGAGGTGATCTTGGTCTCGGAGCAGTTCCTGGAAGAGAGGCAGAGTTCAGACAGGGTCTGGATCTGGCTTTGAAGTATGCACGAGCTTTGGACTGCAAAAGGATCCACCTGATGGCTGGGAGGCTTCCTGTGGGCTCGCACAGAATGGCGGTTGCCAAGGAGATGGAGGCCATCTTTGTGCAGAACCTAACCTATGCCGCTGACATCCTCTCAAAGGAAGGAATCACCGGCTTGATTGAACCAATCAACACAAGGCTTACAGATCCCCGGTATTTTCTGGACTCTCCTCATCAGGCGGCTGCAATACTGGAGAAGGTCGGAAAGCCCAACATCAGGCTGCAAATGGACGTCTTTCACTGGCAAATAATGGATGGAAACCtgacacaaaacatgcacaagtATTTCCCCATTATCGGTGAGTGAGATGTTGTACTCTAATCCTTCAGCCTTGGTGACTCTAGAggctccctctcccctcttctATTCCCCAAATGATGCTTCTCTggctacaaaataaattcaaCTGAATCCCGCCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008903 hydroxypyruvate isomerase activity molecular_function

KEGG:

id description
K01816 hyi, gip; hydroxypyruvate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135103 lncRNA upstream 590588 34874342 ~ 34877423 (+) True G100279
TU135083 lncRNA upstream 615493 34852313 ~ 34852518 (+) True G100259
TU135081 lncRNA upstream 618519 34849203 ~ 34849492 (+) True G100257
TU135031 lncRNA upstream 674121 34737507 ~ 34793890 (+) True G100215
TU135014 lncRNA upstream 790081 34666482 ~ 34677930 (+) False G100199
TU135182 lncRNA downstream 1118 35478671 ~ 35479610 (+) True G100337
TU135233 lncRNA downstream 204176 35681729 ~ 35684226 (+) True G100383
TU135332 lncRNA downstream 330614 35808167 ~ 35808391 (+) True G100453
TU135341 lncRNA downstream 384454 35862007 ~ 35862327 (+) True G100462
TU135375 lncRNA downstream 666325 36143878 ~ 36144088 (+) True G100492
XM_039810431.1 mRNA upstream 806342 34528568 ~ 34661669 (+) False arhgap39
XM_039810430.1 mRNA upstream 810103 34528568 ~ 34657908 (+) True arhgap39
XM_039811944.1 mRNA upstream 1011055 34454381 ~ 34456956 (+) True LOC120565866
XM_039811945.1 mRNA upstream 1011055 34454383 ~ 34456956 (+) False LOC120565866
XM_039811929.1 mRNA upstream 1083984 34380747 ~ 34384027 (+) True LOC120565861
XM_039812039.1 mRNA downstream 195807 35673360 ~ 35678429 (+) True ddx10
XM_039812350.1 mRNA downstream 222272 35699825 ~ 35723836 (+) True LOC120566096
XM_039812351.1 mRNA downstream 222302 35699855 ~ 35737010 (+) False LOC120566096
XM_039812352.1 mRNA downstream 222302 35699855 ~ 35721555 (+) False LOC120566096
XM_039810201.1 mRNA downstream 737911 36215464 ~ 36234599 (+) True dsg2.1
TU134982 other upstream 960459 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 1589680 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 2198851 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 2589396 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 3824565 31633565 ~ 31643446 (+) False LOC120564930
TU135393 other downstream 749534 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 995985 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 1017931 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 1055173 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 1217884 36695437 ~ 36698869 (+) True G100671

Expression Profile