RNA id: XM_039812492.1


Basic Information

Item Value
RNA id XM_039812492.1
length 8787
RNA type mRNA
GC content 0.58
exon number 36
gene id LOC120566192
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5024510 ~ 5201875 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCGTCAACATTGCCTCGTTGTCCCGTTGTGAAAGCTCCAGCCTCTCCCCTCCATCCTCAGCTGCTGAAGCCCCCGCCGGTGAGGGGAACCCGGATCTGGGACTCGGACGGTCCCCGGTGATCCTCACACGCAACATCCGAACCGTGGACCAGgaaatatcttttatttttcatttttccgTGTTCGTGTCGGTTTGTAACGGTGAGAGACGGACTACTGCAGCGGGGGGAGATGCTGTCATGCAGAGACGTCATTGatttaaaaggcaacaaaaaaacacagcagtgacATTAACTGGGGAtcgttttatttatatatttattttatcaccGAGAGGCAGGAACCGAACCCGGATCGACGTGACAGTAGCCTGCATGTCTGCCGAGAAACACCGAGGAAGTGAGAATGTAACCCATGACAGAGATTCACCCACATCCGTTCTGCCTGGAAGTCTTCTTCACTGAATCAACGCTGTCATGTCAGCGTGATCCCAcgagattttttatttttttttcttaatcagAAAAACTAGACGGATGCTCCGAACAGTCTTTATGAATAATCTAAATTATTTAGGTGCATAATCAGTTCCTAAAATCTGAATTCCTGCAAAGAAATCAATTTGATTTAAACCTTTAAGAAAGGATTTAACAAATGTGAGATTGACACAGGGAATGTAAACAATCTCTCAGTACAAGGTCTATTTAGTAGCTGTGCTGGACCTTTTAATCCCATCCCAcgatcttcatcagcagatggagaTTTTTTTGAATcggaaaaaaaaactagacGTGATGCTCCCAACAGTTTTGGgatttatttgaattttttcatGCAGAGCATCAGGTTATTATAAAATCTCactttctgcaaaaaaaaatttgattcattttgaTTTAATCTTCAATGAATGATAGGCAAGTTTGAGATTGAAAGTTCAGTCTTGACCTGGAAAAAAAAGTAGCCTAAGGTCTATTTAGTAGCTGTGCTGGAGCTTTTAATCACATCCCATGATCTTCCTCAGCAGTTCAAGTTTAATTACTTGACACTGGAACAGGAAGGACGGAGGCTGAATAGGGACAAAAACACATCGAAGCGACAAAAGGAATTGACTTGCTCTTAAAGCGCTGATATAATATATCATATTATTCGTCAGTTCGCTGCTACACGCTGTTGTGATGCTGGATGTGGTGAAGATGAAAGAGGCGTGCAGGATCTGCGCCCGCGAGCTCTGCGGCAACCAGCGGCGCTGGATTTTCCACCCGGCGGCCAAGCTCAACCTGCAGGTGCTGCTGTCCCACGCCCTGGGCCACGAGCTGACCCGGGACGGCCGCGGGGAGTTCGCCTGCTCCAAGTGCGCCTTCATGCTGGACCGCATGTACCGCTTCGACACGGTCATCGCCCGCGTGGAGGCGCTGTCTCTGGAGCGCCTCCAgaagctgctgctggagaaggACCGGCTGAGGCAGTGTATCGGAGGCCTTTACCGGAAGAACAACGCCGAGGATGGGAACGTCGTGGCGGTCGTTGGCACCGACGTGGCGTCCGAAGACTCTCCTGTGGTGGATCTGTCAGCCCTGCAGGATGGACGGTACTCCGTTATGATCCAGGATGATCTGACCTACTCCGAGTACGAATCCTGGGCTGATAAGGAGGACGCCGCCACTCCTGACGCCCACACGCATCACCACCTCCAGTGCCCAGCGGCAGACTCCGTCTCTGGCCAGAAGCCGAGGCGGTGCAGGGGTTGCGCGGCGCTCCGTGTTGCTGATTCGGACTACGAGGCCGTGTGCAAGGTTCCTCGCAGGGTCGGGCGCAGGAGCACATCCTGCGGCCCGTCCACCCGCTACTCAACAGCCACTCCGGGGGTCGAGGAGCCGGCCACAGCCCCCGGAGGGTCTGAGGCAACAGCAGTCGCCTTTGAGTCCACTGATCAGACCGCGTGTGACCGGACGAGTCCCAGCCCGGCATCGTCCGTAGAATCTCTGGACACCGCCGTGGACGTGAGCTGCCTTCCTGTGAACCAGAAAGACAAGGAAGAAGATCCACAGGAGGCTCCAGCGAGAAGGGACATGACATGGGACAAAGACCCAAGCGAGAGCTCCGTCTCTGGGCTTGAGATGACGCTGAGCCTCCTGAGGGGCTGGGTGTACCGGCCGGTGAAGCCGCGGAGAGGCAGCAAGCTCCCAGTTCTGGTCAAAGCCAAGCTGGAGCAAGGCCTGTCGCTGTCCCTGTCCGTCCCCCACCTGAGGTCCCCCTGTACAGGGGCAGCGGACTGTGAGCTGTACCACCACCAGTCTGTCCCGGAGGTGGTGACCCCGTGTCCGCAGCAGGATCTGCAGGCGGAGCTGGCCGAGATGGAGGAGCAGTGGCTGGATGATTATGTTCAGTGCAGGCCGTTCCGCTTTCAGCAGAGGCTGATTGCCGAGCAGCAGGGTCAGCTCAGCCAGTACGAGAGCGCTGCGGGTCAGTGTGTCGGCGAGCTGCAGAAGGCCCAGGACCAGGTCTGCTCGCTCCAGGCCAAGATCAGAGAGAGCGAGACCAGGAACCAGaagctGCAGGAGCGTCTGGGTGCGATGGAGTTGGAGCTGCGTTCGGCCCGAGAGGAAGCCCAGCGACAGGAGAGAAGCATCCAGAACATAACGGACACCGCTAACTCCAAGGAGGCCGAGgctGCGGAGCTGTATCGGGCGATTGAGGAACAGAATAAGATGCTGTGTTCTCTCAAAGAGCTCGCCCAGCGCGGCCAGCTGCAGGTGTCCGGTGCAGACAGTGCTCGGGGTCAGGGTGAGGTGCTGGCTCTGCAGGCCTCTCTCTTCCAGGCTCAGCTCGAGCTGCAGGCGGGTCAGCGGGCGCAGCGGCAGGCCGCCAGGATGCAGGAGGACCTGAGCCGAGCCCTGCAGCGGCTGGAGCAAGACCTGCATGGGGCGCTGCAGCACCGGAGGGACACGGAGAGACACAACCAGGATCTGCAGCtggctctggagaaggctcgaTCGGCTCTGCAGGAGAGGGAGGAGCAGCTGAGAGAGGGCGACGGCGAGCGCCAGAGGCAGGACGCGGCGAGAGAGAAGACGGTCCGAGAGCTGAGGGCGGCGCTGCAGACCAAAGAGCAGCTGATGGAGGACTACTGTCAGCTGCTGGAGGATccaaaggaggagagagactcTCTGCTTCAGAAACTCCACCAGAGAATCAAGGAGAGAGACCGAGCTCTGGAgCGAGCGCTGGACGACAAGTACCGCAGCgtggaggagaaagaggaggcgACTCGtcggctgcagctgctgctcagAGAGCGGGAGAGAGACCTGGAGAGGCAGCGCTGCGTCCTCGCCAACAACGAGGAGACCATCACTagcCTGGAGGTGCTGCTGCGCGGGAAGGCTCTGGAGCTGGAGCAGGTGTGCGACGCCTGGAGGAGCGTCCAGCGTCAGCATCACGAGAGCGAACGGAGACAGAGCGGcgtcctgagagagagagacgccaTCATCAGCCAGCTGCAGGCGGCGCTGCACGCTCGCACGCAGGAGGCCCAGGAGCTGCGCTGCTCCCTGCTGGCTCCGATCCAATCAGTTCCCAACGACGTTCTGGAGGAGCTGAAGGCCCGCCTCCAGCTCAAGGACCGCCTCTTCCAGGAAGTACTGGCCGACCGCACCCAGCAAGCCCAGCAGCACCACGAGCAGGTCCAGGATCTGCTCAGAACCATCAGCTCCAGGGACCAGTACATCCAGGAGTCTGCGGGCCGGCTCAGTGAGGTGATGGGCGAGCAGACGGGGAGGCTCCAGGAGCTGCGCAGACAGCTGAGCTCGGGCGTCGGGTCAGGGTCAGGGTCAGGGTCTGGGTCAGGGTCTGGGTCAGGGTCTGGGGCAGACGCGGCTCTGGAGCTACAGGCCATGCAGGAGGAGCTGCGTCTGGCTCTCAGGAGGGAGGCGGAGAGCCAGGAGCTGAGCAGGAGCCAGGCCGCCAGGGTGGACGCCCTCACCGCCACGCTGCACGTGAAGGACGAGATCATCCGGGACTTCCAGAGGCAGATGGTGGAGCCCTCCGCTCTCCCGCTGGTTGAGCAGTTGACCCAGCAGGTTCAGGAGCTGAGGGAGAGCCTGTTCCAGCAGGACGGTCCCCCGGCCAGAGGCCCCGTCCTGGTCCGGGACTGGCCTAACGGCAGGCAGCCTGAGTTTGGAGAGCTGAGCTCTGAGGATGAAGACGAGGCCGATGATGATTTAAACAGCGAGTACACCGAGAGCGTTGATGAAGACGAGTCCAAACTGAGGGTCCAGTCTCTGGCCAACACCAAGGGTTGTGGAGGCCCAGAAAAGGCTTCATCCCAGGATCAGCTGTTTGACAGGCAGGGACTGATGGAGGTCAAACAGCTGGTGGAGCAGAAGAGGGCGGTGGAGAGAGAGCTGGGAGAGCTGAAGGCTCAGCTGGAGAAGGCCGGCTTCTCCTCACTCTCACAGATGAGGAAAGCTCTGTTCAGCCTGCAAGCAGAGAACGGAGATTTGAAGCATCGGCTGGCTCAAGGGCTGCAGCCCGACGGTAAACACAGCGAAGGACAGATGGGGTTGGACGAGGAAGACGAGGAGGAAGAGTTGGATGTGACCATAGAAGGggtggaggaggatgaagaggaaatcTCTGAGATGTGGGACCCCTGGGATGGCGAGCAGACAAACATCCAGCCCGCCGATGAGCAGAGAGCCGACAGACCGGAGTCACTGCACCCACTCTCCGAATCCTCTCAGGATGTCGTGGACAGCGAGCGTTCAGCCAGTCCGCAGCAGGGCGCCGTGTCCTCGCCGAAAAGTGGGAAGACAGTCCGTCTGCAGCAGAAGAGCAAAGAGCTGCAGGAGAGGCTGATGGTGTCTGAGGCCACGGTGCAGGCTCAGGCCGAGCAGCTCAAAGACTACAGGGAGCTGCTCACGGAGACAGCCGTGCAGCAGGACAGTAAGCAGATCCAGGTGGACCTGCAGGACCTGGGCTACGAGACCTGCGGCCGCAGTGAGAACGAGGCCGAGAGGGAAGACACCAGCAGCCCAGAGTTTGACGACCTGGAGATGTGCACCTCTCTGGACTGTGGTTCCCAGTGGTGGCCTGCCAACACCAGCAGCAGCGCCACCTTAACCAAAGGAACGCCCCAGGGCTCCGGCGACGGAGACGAGATGTCCTCTCTCCAGCGCCTGGTGGAGGACCTCCGCTCGCAGCTGTCCCGCTCCCAGGCGGTGATCCGCGGCCTCCAGAGCCGCCTGCGCTCCCTCTCCACCTCCAGCGACTACGCCCCCTCCACCCCTCGCAAAGTCAACTGGTCCTTCCAGGCGTCGGAGGACGACGAGGGCTGGCAGTCGTCCGACGGGGGTCCACTGGCGTCGCCCCGTCACCCCCGCCCGGACAGGGGCCTGCAGGAGCTGGCGTCCCGCGTGGACGCACTGGAGGACCAGCTGAGGAAAGGAGGCAGCAAGTCCGTCGGCGAGGACGTAAAGTCTGCCACCTGGCCGGGTAAATTCGATACTCTAATCCAGGCTCAGGCCCGAGAGCTGTCCCACCTGCGCCAGCGGCTGAGGGAGGGTCGGGGCGTGTGCAACATCCTCACGCAGCACCTGGGCGACACCACCAAGGCCTTCGAGGAGCTGCTGAGGGCCAACGACATCGACTACTACATGGGCCAGAGCttcagggagcagctggctcAGAGCGGCGCCCTGGCGCAGCGAGTCGCCGCAAAGATAAGCGGACGAGATCATCCCGAAGATCCAGATGAGAAAACAGAGCTGCTCGCCATCCGgcTCAGTAAGGAGCTGCAGCAGAAGGACAAGATCATCGAATCTCTCCGCTCCAAACTAAACCAGCagcaccaccaccatcatccTAATCACCACCGCTCTGACACGCCCTGCAGCAGCCACGCCCTCTCCGACACCACCGACCAATCGGATCGCATCTCCTATGTGTCTGACGAGCACGGATCCACCAACGGGGAGCTAGACCTATGCTCCGACGTGGACGCTGCCAGCGAGCTCGGCCAGAAGGACGCGCGCTCTTCTACCAGAGTCAGCACAGGCAGCCACTCTCACAGTGTGAACACCATGTCACGTCATCCGTCTGTCCCTCCATCCATCTCCTCGTCCATCCACACAGCCCAGTCCTGTCTCAGctgtcccagcatgcattgccCCAGCTCGCAACACAAGCCCGCAGCAGAGATGCCGAGTCAGACAGGGTTTTCCACTCCCCAGTCCAAACCTCCCCAGGGTTTCCCGTTCTCCCAGCAGCAGCCCGACTCCTCTGCCTTCCCGCCTCTCTCCTACCACGGATACCGGCCGTCACCTTTCAGCAGCGGCCTGGACGCCGGCTCCACGTTGAAGGCCGGGGCCAGTCTGCTGGagagcagtgcattgtgggatatgaGCTACGGTAACCGGGCAGTGAGACTCGGAGCTGACCTGTCTTCGGGATCCTCGGGGTACCAATCAGGCACCAGCAACACAGGTTCAGACCTGATGAAGGAGCATCTGAGAGAGATCAGGAGTCTGAGACAGAGACTGGAGGACTCCATCCAGACCAACGAGCGCCTCCGACAGCAGCTGGAGGAGAGACTGGCCCGCACCGCCACTGAGAAAgGTGCTCCTACTAACATCTACATCCAGGGTCTGGACTCGGCCGGCCAGCTCTCCAGTGAGATCAGACTCCTGAAGGAGGAGAACGTCAGCCTGCAGAGCCAGCTGAAGCAGGCGGCCAGAGAGAGCACCAAGGAGACGGAGCATCTGAAGAAGGCGGAGCTAGAGGCAGAGAGGTGGgcggagcaaagcaggaagctGCAAACGGAGACTGAAGCTCGCAGGCTCGAGATTACACAACTGAAACAGGACCGGCAGAAGAACCAGGAAGCCgtcaacagaCTGCAGCACGAGGTGAGCGTGGtccagcagcagctctgtgagagCCGCAGTCTGGTCCTCTCTCTTCAGTGCGAGCTGCAGGTGCAGCGCCGAGCGTGTGTAGTCGCCACAAACACGCGCGCAGCAGGTCAGGCCAGTAAAGAAGCCAAACTTGGACCCAGCGCTGCGACCTTTGACCCCAGAGAGCTGCACGTTCAGCTGGAGCAGCAGCTGAGCGGACAGGCCGACACACAGCCTCCATCCAGGAGACAGCTCTTCAACGAAAGCGTCCCGTCCCCGCCTGTGAGAGACACTGGACTCGTCagtccttcctctcctcttcatcctgcGCAGAAACATGCAGCAGAAACCGGAGCAGCCTCCACCCTGCAGGGTCAAGCCCCAGACGGCTCATTCGCCAACCGTCATGGCGCCCATGCAGTGGGCCACATTGATGACTTCAAGGCTCTGCAGCAGCAGATCCTGCAGGGCGGCGCTCTCCTCCGCAAGATGGAGACCGCCCTGTATTCCCTGAGTGGCCCGCAGGAGTTCAGCCTTCATCAGCCTTCAGACTCAGGATCCGTCAGGAAGCTGCTGTCTGACACTAAAAGCCTGCGACAGATACTGGAGGAGGCCGACTCGCTGCTCCGGATGTTCTGGAGAGCAGCTCTGCCAAACTCCGAGGAAACCAAACAGGATGCGTCTCTGAGGGAGGAGGTCGTCTCTCTCCGGCTGAGGCTCTCAGAGCAAGAGCAGGCTCTCAAGGACGCCATGGAGAGAGTCAAGAGCTCCAACCGCACCAAAGATAGCATGGAGCACTTTATAGTCAACCAACtgtCGAGAACACGGGACGTGTTGAGTAAAGCAAAGACAAACTTACAGGAGAACCAGCTCAGGATTTCCTCCCTCCGCCGTGCCTCTTCCTCCCCCTCGTCCTCCTCTTTTCCCTCCCCCTTCTCTTCCTCAcccttctcttcttcctcacACCCCTGGCCTGGTAAAGGTGAAAACACAGGAGGTTTCTGTGAGCTCGCCTTCTCTCCTGGTTGGGGTGTCATGAAGCCTCggatttcctcctcctcctcttcctcctcctcctcttcctctgctgtGCCGGGACGGGCTCAGCTCCAGCGCCCCCTGCAGTCAGCCTTCCTGTAGTGCACCATCTCATTGTTCAAACTGATGGAAAATGATGGAGATTCTGTCTCTCTTATTGTCTGGAGAAGCCTTTCAGttgtgtgctgtctgtctgtcaagagTTTGTTGTTAGAGTCCTGCAGGTTCATGATACTTTATGAATGTGAATGGTTGTTTTATGATTGGCTGAGGCCATCAACTGAAGCGTTTCCTCTCATTTATATGAGACCAGACTGAGTTTGGCTGGAGTTGGTTTATGATTCACAACTTTGGATTAagccttttttttcattttcacagataaaatctaaactttacaaatatgaaaacaGATTTGAAACAGTTTTGGGGCTCTTAGCAACTGTTGAGTCCAGGTCTGATGATTCTACATGTACTGTTTTTAATGTGGAGCTGCTCTTATGTGGTCTTCTTGGCACATGAAAACAGTGACACTGGGGGTGGCTTCTAGGTCTCCAGCCCCGAATCTTTTGGGGTTTTAAAGTAACTTCAACTTTATGTCATTTTACCTCAGTCTCTCTGACAGGACTGGACCGCAAAGTCAATGGAGCAAAAGTTCTGTTACTGGGGAAATATCATCTTTTGATTCTGTGAACTCTACTAAAAAATATGATTCAAGATTAGTAATGCCAAATATCATAGCctcctcctacgtacttccgctcagttttcattttccttcagtactccgtctgggtttgcggtatattctgtGGTTTTTTCTCCGGtaaaatctttaccggtccaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126067 lncRNA upstream 25764 5062327 ~ 5100734 (+) True G93432
TU126066 lncRNA upstream 26182 5058606 ~ 5100316 (+) True G93431
TU125935 lncRNA upstream 182551 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA upstream 182551 4943645 ~ 4943947 (+) False G93350
TU125934 lncRNA upstream 187088 4939148 ~ 4939410 (+) True G93349
TU126108 lncRNA downstream 126111 5327985 ~ 5328233 (+) True G93448
TU126099 lncRNA downstream 151470 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 198257 5400131 ~ 5411358 (+) True G93441
TU126122 lncRNA downstream 198943 5400817 ~ 5406747 (+) True G93462
TU126089 lncRNA downstream 286420 5488294 ~ 5492457 (+) True G93437
XM_039812515.1 mRNA upstream 126058 4966560 ~ 5000440 (+) False prrx1b
XM_039812498.1 mRNA downstream 9296 5211170 ~ 5486885 (+) True mast2
XM_039812499.1 mRNA downstream 9296 5211170 ~ 5486885 (+) False mast2
XM_039812500.1 mRNA downstream 9296 5211170 ~ 5486885 (+) False mast2
XM_039812501.1 mRNA downstream 9296 5211170 ~ 5486885 (+) False mast2
XM_039812505.1 mRNA downstream 127966 5329840 ~ 5486885 (+) False mast2
TU125908 other upstream 413313 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 829088 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 832608 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 908672 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1519673 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 833495 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1000211 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1153023 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2147936 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2696798 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile