RNA id: XM_039812508.1


Basic Information

Item Value
RNA id XM_039812508.1
length 1602
RNA type mRNA
GC content 0.53
exon number 5
gene id gorab
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4934761 ~ 4946307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggtccTTGACGTGGCATCAATAACAAAGATGGCGGAAACGTTTAAAGCTTCTTAAGTTTTCCTGTATATTTCGAAGTTTAGAATGATTATATTTAGTCTATAAGCAGACTGTTTCATCTATGCGTTATTCTGGCTGCGTTGTTTGGGGTATTTGATGTGTGAAGCTGAACAATGAGCGGTTGGGCCGGTTTTTCTGAGGAGGAGTTACGGAAGATGCAGCAGAAAGACTCCGCTGGGTCCGCAGCAGCAGCCCGCGGACGGAAGCCGCTTCCAGCCAACCGGAGTCGGCAGCAGATCCAACGGGAGAAGGCTCTTCAGTTAGCCGCTCAGAAGAACGCTGGAGCCGCGTCTCTCTGCATCCCGCCAGAGCAGCAACTTACCAAACCGCCACCGGAGCAGCAACTCACCAAATCGCCACCGGAGCAGCAACTTACAAAACCGCCACCGGAGCAACAACTCACCACACCGCCGCCGCCGGAGGAAGCGGGAGCTACAGCGGTCGAACAGGTGGTGCAGCAGAACGCCGTCGAGATAAAGCCGGCTCCAGAGAAGGAAACCCCGGCGGTCAAAGAGCTGGAGATACAGGAGGTGGCACTACGGGAACAGACGCGTCTGGAGCAGCTGCAGCAAGAGCAGAAGACAATGGAAGAGAAGAATAAACGCAAGAAAGCTCTGCTGACAAAAACCATCGCCGAGAAGTCCAAACAGACTCAGGCGGAGGCTGTGAAGCTGAAGAGGATCCAGAAGGAGCTCCAGGCCCTCGATGACATGGTGTCCAATGATATCGGCATCCTAAGAGGCAAGATAGAACAAGCCAGCTGGGAATACTCCGCTGCCAgAAAGCGCTACGAGAAGGCGGAGGCGGAGTACGTGACGTCCAAGCTGGACCTGCACAAGAAGACGGAAGTGAAGGAGCAGCTGACGGAGCACCTCTGCGCCATCATCCAGCAGAACGAGCTGCGCAAAGCCCACAAGCTGGAGGAGCTgatgcagcagctgcagctccACGCCACCGACGAAGAGAGGGGCGGCTGCGCCGAGACGCAGAGAAACGGTCCGGCAGAGAGCGGGGAGGGAACGGAGCGATCAACCAAAGACTGTGGACCcacagaggaggaaaagggCCGGGGGGGCGTCCTGCAAGAGCCCCACCCGGTGACCGAACCACCCAAGACTGAACAGAACTGTAAAACTCTAGAAAACGGTGTTCAGAGTGAAATCGTGGCCTCCTGATGCTCAGAAAACTAGATTTAAATGTCTGGACTTTATCATGATCACACATGTCGTACTGTAGGGATCCATATGGAACACTAACGCTAATGTCAATGTCTCCACTAATGCTGTCGGCTAAGCGATGCTCGATGCTGTAGCATCCAGGGCTGGGTATCcaatagggatgcaccaaatccagatttttggggttcggccgaataccgaatccgcTGGTGAAGATTCTGCCGAAACCGAATACCAAATCCTACTCTCATCCTCAGTCCGTtgaaggtgcagtaggtaagactcataaaactaactttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtacttaaaaaaa

Function

GO: NA

KEGG:

id description
K19748 GORAB, SCYL1BP1; RAB6-interacting golgin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125930 lncRNA upstream 41055 4893318 ~ 4893706 (+) True G93345
TU125920 lncRNA upstream 129529 4798411 ~ 4805232 (+) True G93335
TU125910 lncRNA upstream 148817 4711274 ~ 4785944 (+) True G93327
TU126066 lncRNA downstream 112299 5058606 ~ 5100316 (+) True G93431
TU126067 lncRNA downstream 116020 5062327 ~ 5100734 (+) True G93432
TU126108 lncRNA downstream 381678 5327985 ~ 5328233 (+) True G93448
TU126099 lncRNA downstream 407037 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 453824 5400131 ~ 5411358 (+) True G93441
XM_039812521.1 mRNA upstream 61405 4852948 ~ 4873356 (+) True mettl11b
XM_039812507.1 mRNA upstream 150610 4714655 ~ 4784151 (+) True niban1a
XM_039811513.1 mRNA upstream 221528 4685224 ~ 4713233 (+) True trmt1l
XM_039811615.1 mRNA upstream 272576 4657761 ~ 4662185 (+) True LOC120565686
XM_039812509.1 mRNA downstream 20252 4966559 ~ 5000440 (+) True prrx1b
XM_039812511.1 mRNA downstream 20252 4966559 ~ 5000440 (+) False prrx1b
XM_039812510.1 mRNA downstream 20252 4966559 ~ 5000440 (+) False prrx1b
XM_039812512.1 mRNA downstream 20253 4966560 ~ 5000440 (+) False prrx1b
XM_039812514.1 mRNA downstream 20253 4966560 ~ 5000440 (+) False prrx1b
TU125908 other upstream 221576 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 637351 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 640871 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 716935 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1327936 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 1089062 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1255778 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1408590 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2403503 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2952365 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile