RNA id: XM_039812515.1


Basic Information

Item Value
RNA id XM_039812515.1
length 2047
RNA type mRNA
GC content 0.51
exon number 5
gene id prrx1b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4966559 ~ 5000440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGCGCACACGGAGCTTTGCGCATCTGGTcgtcatcagcagcagcagctcctccTGCTCAGATGTGACTCAACCAGAGTGGGAAgacagcttcttcttcttcttcttcttgagcTCAGAGGACTTCTTTGAAAAACTTCTTCAAAACGTGTCTCTctccggcagcagcagcaggacgcgctgatttttttctcttgttttggCGTTGACGCGCGCCGCCGGATGGATTGTGTTTAGGGGTTTGTTGGGGGAAAAAGAAGCCGCTGGCGAGGAGAAAACTTTGCTGAAGTTCGTTTAAGCCCTGCGCGGCTAATCTGGATGTGAACAGAACCGAGTTCTGCTCGGAAGACCcggagtctctctctctccctatctccctctctctctctctctctctctctctctgtggccgGTTTGTGGAGGCGCGGATCTTGTTGGCTCGCTTGTGATTCTtccctttcttcttcttattaccGCACCGTTTCTTTCTGCCGTTCCCCCACTTTGCGTCATGACTTCTAGCTATGCACATGTAATGGACAGGCAAGCATCGCTATCAAACCGCCTGGAGAGCCCGATCACGTCTAACCTGGACAACCTGCAAGCCAAAAAGAACTTCTCGGTCAGCCACCTGTTGGATCTGGAAGAGGCCGGGGAAATGGTCGGAACCCAGGCGGACGAGAGCATCGGGGAGGCGGGGAGGAGTATGCTGGAGTCCCCGGGGCTGACCAGCGGGAGCGACACGACCCAGCAGGAgaATGAACAGATGAACAcggaggagaaaaagaagaggaagcAGCGCAGGAACAGGACCACCTTCAACAGCAGCCAGCTCCAGGCTCTGGAGCGAGTGTTCGAGAGGACACACTACCCCGACGCCTTCGTCAGAGAGGACCTGGCCCGCCGCGTCAACCTCACCGAGGCCAGAGTCCAGGTTTGGTTCCAGAACCGGAGAGCTAAGTTTCGCAGGAACGAGCGCGCCATGCTGGCCAGCAAAAACGCCTCGCTCCTTAAATCTTACTCCGGAGACGTGACGGCGGTGGAGCAGCCAATCGTACCGCGCCCTGCACCGCGCCCAAATGACTACCTGTCCTGGGGCAGCGCCGCCCCCTACAGTCCCGTCGCTCCCCTCTGTCAGCATGAGCAGGGCGGGCCCAGATCCTGTGACCCTCCTGACGAGCGCCATGGCAACCTACCCGCCCACCTGCTCCAACACCAACACGTCCCAGGGCATGAACATGGCCAACAGCATCGCCAACCTGCGGCTCAAAGCCAAGGAGTACAGCTTGAACCAGGTGCCCACGGTCAACTGAGAGGAGGAGAGGCCGGGGGAGCGCTCCGGCCCTGGACCCCCGCCGACGGACCCCGTCTCTGGGTCCAGCATCATCTCACACACCCCGGATCCTGAAGCCTGCTCTTCTCTTTTAACGGAGCAGCCCCGCCTGTGGCGATACTACACCTATATGCAAAAATTGTTTGGACACCGAGCGCTGGCAGGATGTTTTTCCAAAGCtggcaatttttttattttatttttttttattctcctgAGCATCACTGAACTCTACttttgtacaaaaaaataataagagaCACCTAGACTGGATGCTGTAGCCGACAAATATCTGCGTAGTTTTACAATTTTGTGATTGTGACTGAAATGGAAAGatggtttttattattttttttttatcagagaaCTTGTTCTCGACGGAGACTCGTGTAAGGACTACGTGGCTTTTCCCTTCGGATAGAATGACACCAGATTTGGGATCAACAACACTATTTTTTCATCAACAAAACCGCGAGGACTTCCTCTGACATTTATGcaattaaaaagagaaagatagatttgtttttttccacatttctttCCATGTTATACCACTGATGACGAGCATTTTGATTTTCATGTAATAGTCCAATATAAAGGAAAAGGCTAATGTATTTTCTGAATCCAAAAAAACCATCTCTTAATATCCTATGATATCCTTTATTTGTAACAGAATAAAAAActtgtaaattaataaaaatgcattACAAGCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125935 lncRNA upstream 22613 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA upstream 22613 4943645 ~ 4943947 (+) False G93350
TU125934 lncRNA upstream 27150 4939148 ~ 4939410 (+) True G93349
TU125930 lncRNA upstream 72854 4893318 ~ 4893706 (+) True G93345
TU125920 lncRNA upstream 161328 4798411 ~ 4805232 (+) True G93335
TU126066 lncRNA downstream 58166 5058606 ~ 5100316 (+) True G93431
TU126067 lncRNA downstream 61887 5062327 ~ 5100734 (+) True G93432
TU126108 lncRNA downstream 327545 5327985 ~ 5328233 (+) True G93448
TU126099 lncRNA downstream 352904 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 399691 5400131 ~ 5411358 (+) True G93441
XM_039812508.1 mRNA upstream 20253 4934761 ~ 4946307 (+) True gorab
XM_039812521.1 mRNA upstream 93204 4852948 ~ 4873356 (+) True mettl11b
XM_039812507.1 mRNA upstream 182409 4714655 ~ 4784151 (+) True niban1a
XM_039811513.1 mRNA upstream 253327 4685224 ~ 4713233 (+) True trmt1l
XM_039811614.1 mRNA upstream 305123 4657761 ~ 4661437 (+) False LOC120565686
XM_039812496.1 mRNA downstream 24070 5024510 ~ 5201873 (+) False LOC120566192
XM_039812497.1 mRNA downstream 36551 5036991 ~ 5201873 (+) False LOC120566192
XM_039812495.1 mRNA downstream 36949 5037389 ~ 5201873 (+) False LOC120566192
XM_039812491.1 mRNA downstream 126058 5126498 ~ 5201875 (+) False LOC120566192
XM_039812488.1 mRNA downstream 126058 5126498 ~ 5201874 (+) True LOC120566192
TU125908 other upstream 253375 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 669150 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 672670 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 748734 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1359735 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 1034929 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1201645 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1354457 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2349370 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2898232 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile