RNA id: XM_039812531.1



Basic Information


Item Value
RNA id XM_039812531.1
length 3677
RNA type mRNA
GC content 0.46
exon number 24
gene id oca2
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40206026 ~ 40260251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTACAGACCCACAGTGCTGAGCTCTTTGCTTGGTGAGcacaggagaggagaagaaacaCCTCAGCCTCTCTCGTCTTCAGCCTCTGTGCTCCAgctaacagcagcagcagcagcagcagccagagAAACAGTCCCAGCAACAGTAGCACATATATCAGCTTTTCTACAGGATTCAATTAGCGTGAATTACTTTTATTCATTTTGCTGTTGGATGTTCATAGTTTAACATCACAAACTTTATCATTACTActgttatcatcatcatcatcaatgtccttgtttttatcatccttcatcatcatcatcatcatcatcatctaaaACAACTTCATCTTTAAAGTTTCATCATGTATTTGGAGAACAAAAACATGGAGATGGAGATGTCTCAGACGTCAGCCCAATGCCATCGCAGGAACAGCCTGAGGTCAACAGAGGCCGTCGCAGGGAACTTTGGGGAGCTGCGTCTGCTGCAGGGCATTTCAGACAGGAGAGACACCCAGAAGCTGCTGCAGCAATCTGCAGTTCTGCCCTCAGGACAGTGCGTCATCCATACTGAGGGCTTTGTCCCTGTTCGACAAGAGGATGGGCACAGTTTCAGTCTGGTTAATATTCTCAGAGGAAAAAGTAATTCAGCCAACATGACAGAGAGGTCACCTCTGCTGAGATTCTCTCAAGATGACAGTATGACCTACATGACCCTACATGACCCCAGCTTTGTTGGAGGGGAAGAGCCCTGGGACAACGGCTCCCTGGACCTGGAGAGGAGGTATAGGCTGGGCAGTGAGGTCACCAGCCTGTCCCTGTCCCGCTCCAGCTCCACGGAGAAGAGTGACCCTCTGGAAAACCTCAACCTCAGCTTCAGATTCACCAGTAATATGAAaTGCTGCTTCAAAGTCTCCAAAGTTACCATAATGTTTACTATCGTGGTTCTCTGCAGTCTGTTCTTCAGCATGTATCCAGACCGAGACAACCCCCGGAGGCTCTTGGCAGTGTCTTCAACAGATAGTTTCTCAATGAACCTGACGGATTTTCGCGACAACGCTTTGCTGAAGCTCCAGGTGGGAGGGCCTTTCACAGGGGGGATGATCGACCTCACCAACCAGGAGTATATCCTGATCCAGGTGGAGCAGACGGAGCAGGAGGGACAACGGAGGAGGAGGACCCAGCAGGTGATTCAGAATTGGACCATCCCTCTGCACAGTGAACGAAGTGACCAGATACTgttaacaaaaacatttgagATGGTCAGCAGTGACCCCATCTTCATCACGGTTCAAGCCTTCCTGCAGGATGATGAGGTGGTGCCGTTATCCATGACCCACCAGTCGCTCTACGTCAATGTGGAGACACAGGTGGCCATTGCTGGAATCATCCTGACTGGGGTCTACGTTCTCATCATCTTTGAGATTGTGCATCGTACTCTGGCTGCCATGCTGGGATCGTTGGCAGCCTTAGCTGCTCTGGCTGTCATTGGTGATCGGCCCAGTCTGGTTACTGTGGTGGAGTGGATCGACTATGAGACACTGGCTCTTCTGTTTGGCATGATGGTACTGGTGGCCATTTTTTCAGAGACTGGCTTCTTTGATTATTGCGCTGTGAAGGCTTACCAGTTATCCAGAGGAAGAGTGTGGCCAATGATCATGATCCTCTGTCTCATCGCTGCCATTCTCTCTGCATTTCTGGACAACGTGACCACTATGATGCTTTTCACCCCAGTCACCATCAGGTTGTGTGAGGTGCTTAATCTAGACCCCAGACATGTCCTGATTGCAGAAGTAATCTTCACCAACATTGGAGGGGCTGCCACAGCTGTCGGAGATCCACCCAATGTGATTATCGTATCAAATCAGGACCTGCGCAAAGAAGGGATTGATTTTGCCAGTTTCACAGGCTACATGTTCCTTGGAATATGCCTTGTCCTCCTCACCTCGTTTCCTTTCCTGCGGCTGCTCTACTGGAACAAAAAACTCTACAACAAAGAGTCCATTGAAATAGTTGAACTCAAGCATGAGATCCTGGTCTGGAGGCAGACGGCTCAGCGCATTAACCCTGCCAGCCGAGAGGAGACAGCTGTGAAATGCCTCCTGATGCAAAAGGTCCTCAACCTGGAAAGTCTGCTCCGCAAGATGATGAAAACCTTCCAAAgCCAAATTTCCCAAGAGGACAAGAACTGGGAGCAAAACATTCAAGAATTGCAAAAGAAGCACAGAATAACCGACAAGGTTCTCTTGGTGAAGTGTGTGTCCGTCCTTGGTGTGGTGATCTTCATGTTCTTTCTCAACTCCTTCGTTCCCAGCATTCATCTTGAGCTCGgttggATTGCTATCCTGGGTGCACTGTGGCTTTTGGTTCTGGCCGACATCCAGGATTTCGAGATTATTTTGCACCGGGTGGAGTGGGCCACGCTACTGTTCTTTGCCGCCCTCTTCGTTTTGATGGAGGCTTTAGCCCAGCTGCAGCTTATCGACTATATTGGAGAACAGACAGCACTGCTTATAAAAGCGGTGCCAGAAGACCAGCGCTTGGCTATAGCAATTATCTTGGTGATGTGGGTCTCGGCTCTGGCTTCTTCTCTCATTGACAACATTCCCTTCACTGCCACCATGATTCCAGTTCTCATCAACTTAAGTCAGGATGCAGATGTGAACCTGCCAATAAAACCTCTCATCTTTGCCTTGGCCATGGGAGCCTGTCTTGGAGGAAATGGCACATTGATAGGAGCATCAGCCAACGTTGTGTGTGCAGGAATTGCTGAACAACACGGCTATGGCTTTTCCTTCATTGAGTTCTTCAGGTTAGGATTCCCCATGATGATAATGACGTGTATGATCGGCATGTGCTACCTGCTAGCCACCCACATTGGACTTGGATGGAACATGTAATCCACAACTGCTATACAGAGCCAAagcgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccactCCATCAAGCATTTAGCGTACTGTAAATGTGATAAGTAAACTGATCGACTAATCAGATTAAAGGCACTATATGAAGCACAGAAGCCATAAGTATATTGAAAATGTCTTTGACTGAAGTGCTGAACAGCAGGGACAAGAATTACAGGAGCTTTGAACTAAATTACAGGAGCTTTGAACTAAACTTTGAATCTAACATCCAACAATTTGAGTATGACGCATTAGTTCTTTGTGACTGGTCAACAGTCACCCTGTTAAGTTTTaccaactttgaaaaaaattcaaACCTTGTGTCCTCACAAGAGTTGACCCAAGGGAAGGACATGGGTCTAAAGGAGAAAATGCTGTACATGGTGCTACTGCCTCAATGGGTATAACTGGGGTAAATGATTCCAGCTATGGCCTCTGATGTCAGACTGTTCATTCTTTTGGAAATCTATGTGGTCTGTTTACAAAAAGCAACAACTAATAATTAATTGTTTTACACTGATTTGCTTTTAGAGACACTGATCACTGTTTTAGGCAAACATTTCACCCATGGTCTACCAAATGTATGTTGATATTTTAAAGGAACCACAATACCCAGTGAAAgggattttatattttatattaatatctAATATTTTTGTCAGATGCCCAAATCTCAATGTGTCATGAATGAACAGCATCGATCAAATTGGAGAATAGCagaatgattaaaataaaacagatgTAGACTgtt

Function


GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU136980 lncRNA upstream 70526 40135207 ~ 40135500 (+) True G101688
TU136979 lncRNA upstream 72672 40129801 ~ 40133354 (+) True G101687
XR_005640213.1 lncRNA upstream 160520 40044182 ~ 40045506 (+) True LOC120565265
TU136956 lncRNA upstream 187333 39984470 ~ 40018693 (+) True G101666
TU137096 lncRNA downstream 112 40260363 ~ 40260609 (+) True G101796
TU137125 lncRNA downstream 226540 40486791 ~ 40487021 (+) True G101823
TU137133 lncRNA downstream 247249 40507500 ~ 40507759 (+) True G101831
TU137134 lncRNA downstream 248640 40508891 ~ 40509367 (+) True G101832
TU137338 lncRNA downstream 599786 40860037 ~ 40940317 (+) True G101990
XM_039810363.1 mRNA upstream 8788 40139434 ~ 40197238 (+) True herc2
XM_039810362.1 mRNA upstream 9460 40139433 ~ 40196566 (+) False herc2
XM_039810366.1 mRNA upstream 9460 40139433 ~ 40196566 (+) False herc2
XM_039810364.1 mRNA upstream 9460 40140683 ~ 40196566 (+) False herc2
XM_039810407.1 mRNA upstream 80080 40072042 ~ 40125946 (+) True cyfip1
XM_039810085.1 mRNA downstream 157742 40417993 ~ 40480166 (+) False gabrb3
XM_039810084.1 mRNA downstream 158085 40418336 ~ 40486609 (+) False gabrb3
XM_039810082.1 mRNA downstream 158085 40418336 ~ 40480166 (+) False gabrb3
XM_039810086.1 mRNA downstream 177600 40437851 ~ 40480166 (+) True gabrb3
XM_039810083.1 mRNA downstream 177602 40437853 ~ 40478229 (+) False gabrb3
TU136718 other upstream 640071 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 741576 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1325421 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2715954 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 3073721 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 254842 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 964840 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 965383 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1192423 41452674 ~ 41453306 (+) True G102165

Expression Profile


XM_039812531.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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XM_039812531.1 Expression in each Bioproject

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XM_039812531.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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