RNA id: XR_005640177.1


Basic Information

Item Value
RNA id XR_005640177.1
length 968
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC120565003
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38013189 ~ 38015274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taacatacacatcagtctgccagaaattcagaagaagaggaagaagaaacaccTCCTGTCCTCTCTACCCCCGTAGAAGAAGAACGCCCCCCTCCCCCGCAGTTGTTGGAATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGGTTATTTTGAATGGACAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATTAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTGCGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGGTGAGGTTGTTTGTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136134 lncRNA upstream 14486 37998455 ~ 37998703 (+) True G101066
TU136035 lncRNA upstream 39998 37956604 ~ 37973191 (+) True G100978
TU136018 lncRNA upstream 139454 37871456 ~ 37873735 (+) True G100963
TU136010 lncRNA upstream 173658 37838902 ~ 37839531 (+) True G100956
TU135983 lncRNA upstream 195432 37817373 ~ 37817757 (+) True G100940
TU136152 lncRNA downstream 30770 38046044 ~ 38046823 (+) True G101080
TU136154 lncRNA downstream 42314 38057588 ~ 38062672 (+) True G101081
TU136220 lncRNA downstream 185295 38200569 ~ 38201905 (+) True G101130
XR_005640226.1 lncRNA downstream 232254 38247528 ~ 38248312 (+) True LOC120565354
TU136319 lncRNA downstream 353423 38368697 ~ 38370401 (+) True G101208
XM_039811591.1 mRNA upstream 22913 37951158 ~ 37990276 (+) False impact
XM_039811590.1 mRNA upstream 22913 37951161 ~ 37990276 (+) True impact
XM_039811589.1 mRNA upstream 22913 37951162 ~ 37990276 (+) False impact
XM_039811592.1 mRNA upstream 28447 37983334 ~ 37984742 (+) True LOC120565667
XM_039812428.1 mRNA upstream 98142 37890292 ~ 37915047 (+) True lama3
XM_039811760.1 mRNA downstream 77752 38093026 ~ 38136180 (+) True LOC120565755
XM_039811762.1 mRNA downstream 77752 38093026 ~ 38136180 (+) False LOC120565755
XM_039811761.1 mRNA downstream 77752 38093026 ~ 38136180 (+) False LOC120565755
XM_039812287.1 mRNA downstream 153187 38168461 ~ 38178363 (+) True nrl
XM_039812288.1 mRNA downstream 153187 38168461 ~ 38178363 (+) False nrl
TU135875 other upstream 523117 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 880884 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1314320 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1478650 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 861937 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1445172 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1545848 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2499819 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3209817 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile