RNA id: XR_005640189.1


Basic Information

Item Value
RNA id XR_005640189.1
length 958
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120565067
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24309609 ~ 24365175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAGGAGCGAGCGTGAGAGAAAACATCACGAAGTCGAAAAACCAAGATAAAATATCAGCAGTGTGTTAAGACCCCAACACTATTTTACCTAATTTCACTTAATTAGGTTGCACGTTAgtgagtctgtgtgtatttttaaagTCTGTGAGTTACTTAAAAATGCTTAGCTGTTGGCCGCTATGCTAGCCGAAGTAACGATGCTAACCGCATAGCTAGGCTGCTAACAATAGTTTCTAGAAGTTAATTTATGTGGCTACTAAAAAAAGTGACCCAAGAATGAGTGTGAGCTTGGACCCAACACAGTATTCAAGTTCAGATGGGCCCCACGGTGACCAGGAAAGCTGTGTGGGCTCTCAGATGAAGACACCCGTTGGACTGATGAGATGTTAGATAGCGCCATTTGTGACCAGAAAAGCCCTTGGGTGCCTCTGAGGAAGATTTCAGCCTGCTGTCACCTTCTACTCTCCGACACAAGTCGTCTCTCCAGGACAGTAACAGAACTgcgGTGTGATGGcgctgcagcagagagagaaagatctgGGTGACCATCTGAAACCAATTATGGCGCCGCTGCAGCCACCCAGAAACTCAGTGACGGATGGGGATCTTGTATTTATAGCTGGGGCTTTATCTCCATTCTACGATCCAAGACCAAGCTGCCTGGAGTCCCATGGGTGATCTGCCCTGTCCCCTCTAATCTGGCCGAGCTGCTGCGATTCCATCACTCCCGGCGAACCACACAGAAAGATTAGTCAGACTCTACGTACAACAGATGTGTCCAACActtgatttgtgtgtgttttattgacTCTGGCCATCTGTTAATACAGTTGCTGGTTCCTCCTCATGTGTTTGTTGATGCACACAGACAGGGGAGCTGAGTGCCAGAAGAAACATTCAGCAaaggagagatgagagagagatagaaggacagagagagagaatggatTTAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131983 lncRNA upstream 53528 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 95750 24211860 ~ 24213859 (+) True G97789
TU131962 lncRNA upstream 100319 24208229 ~ 24209290 (+) True G97788
TU131961 lncRNA upstream 101508 24204365 ~ 24208101 (+) False cks2
TU131884 lncRNA upstream 218290 24090543 ~ 24091319 (+) True G97728
TU132089 lncRNA downstream 146796 24511971 ~ 24513033 (+) True G97896
TU132146 lncRNA downstream 273291 24638466 ~ 24642085 (+) True G97938
TU132243 lncRNA downstream 383853 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 419621 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 422156 24787331 ~ 24787540 (+) True G98015
XM_039810520.1 mRNA upstream 20920 24287104 ~ 24288689 (+) True foxd2
XM_039810519.1 mRNA upstream 28545 24278396 ~ 24281064 (+) True foxe3
XM_039811050.1 mRNA upstream 101468 24204341 ~ 24208141 (+) True cks2
XM_039811047.1 mRNA upstream 126581 24168358 ~ 24183028 (+) True ankrd24
XM_039812449.1 mRNA upstream 172095 24133664 ~ 24137514 (+) True s1pr3a
XM_039810628.1 mRNA downstream 116528 24481703 ~ 24488751 (+) True scyl3
XM_039810629.1 mRNA downstream 116528 24481703 ~ 24488751 (+) False scyl3
XM_039812307.1 mRNA downstream 150259 24515434 ~ 24519540 (+) True sele
XM_039811884.1 mRNA downstream 155459 24520634 ~ 24524358 (+) True LOC120565835
XM_039812319.1 mRNA downstream 159298 24524473 ~ 24531588 (+) True LOC120566076
TU131697 other upstream 831791 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 987700 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1733407 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1734461 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1734685 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 416743 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 487126 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 502842 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1167650 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1365083 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile