RNA id: XR_005640201.1


Basic Information

Item Value
RNA id XR_005640201.1
length 354
lncRNA type intronic
GC content 0.48
exon number 4
gene id LOC120565209
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31828785 ~ 31831713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTCCAacggtctttttcttttctccgaGGCGGGAGAACACTTTTGGAAACACTGAAGCGATTGAATATGGAGGACTTTGTTAAACTAAAGTTAACAGAACGGCAACTTCTTGAGCTGATTGACACTTTTGCAGATTGTGCAGGACTTCGAGGTTCTTCATAAAGAGGCATCAGACTAAATCTTTGACCTGGAGGAGGTTCAGCGATAAGCTTGTTCATGCGGCCCAGTGGGAGGGGTAGAAGCTCCACgtgcagacagagacagagtctTTGTCTCAAGgCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAGGCCTGATTCCACCTGCAGTCTTCAGGATGGGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134625 lncRNA upstream 64133 31761999 ~ 31764652 (+) False LOC120565823
TU134605 lncRNA upstream 112772 31715726 ~ 31716013 (+) True G99837
TU134604 lncRNA upstream 113286 31715160 ~ 31715499 (+) True G99836
TU134592 lncRNA upstream 129249 31656039 ~ 31699536 (+) True G99824
TU134590 lncRNA upstream 163151 31654270 ~ 31665634 (+) True G99822
XR_005640203.1 lncRNA downstream 28 31831741 ~ 31832455 (+) True LOC120565211
TU134656 lncRNA downstream 31424 31863137 ~ 31863649 (+) True G99880
XR_005640202.1 lncRNA downstream 189305 32021018 ~ 32028587 (+) True LOC120565210
TU134683 lncRNA downstream 356695 32188408 ~ 32188807 (+) True G99907
TU134768 lncRNA downstream 605134 32436847 ~ 32507210 (+) False nlgn1
XM_039811868.1 mRNA upstream 61246 31761992 ~ 31767539 (+) True LOC120565823
XM_039810199.1 mRNA upstream 185461 31633445 ~ 31643324 (+) False LOC120564930
XM_039810883.1 mRNA upstream 314869 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 525958 31095881 ~ 31302827 (+) True slc1a7b
XM_039812368.1 mRNA upstream 883160 30934519 ~ 30945625 (+) False akr1a1b
XM_039811660.1 mRNA downstream 389320 32221033 ~ 32410226 (+) False ect2
XM_039811664.1 mRNA downstream 389321 32221034 ~ 32411447 (+) True ect2
XM_039811662.1 mRNA downstream 389321 32221034 ~ 32410226 (+) False ect2
XM_039811663.1 mRNA downstream 389323 32221036 ~ 32410226 (+) False ect2
XM_039811665.1 mRNA downstream 389324 32221037 ~ 32411447 (+) False ect2
TU134550 other upstream 185339 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 197284 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 202989 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 1017549 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1399494 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 1043669 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1435982 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 2043496 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2672930 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 4395374 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile