RNA id: XR_005640289.1


Basic Information

Item Value
RNA id XR_005640289.1
length 311
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120565805
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13704367 ~ 13747072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATGCACTGGCTTACTCTGTGTTAAATTCTGCTGGAGCTATTTCCACAGTGTCTCTCTCCCCATCTACACACTACAAAAAAAGAAAGGCACGTCTGCATCAATCTGCTGTCACTTGTAAACAGCACGGGCACCATGATACTATGATAGAAGTGTTGTTGGAGGAGGGGATGATGAGGAAGATTAAGATGTCCATCTGTTGCCGACCAGTCAGCTTGGATCAGCGTGCAGAGCGACTGATTTGTGGTAACATCTGATTGCAGCGTCCAGGTGAATTGGAACCCCTCCACAGCTGCTGGGTCCAGTGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128338 lncRNA upstream 190302 13510193 ~ 13514065 (+) True G95148
TU128315 lncRNA upstream 217001 13487036 ~ 13487366 (+) True G95139
TU128289 lncRNA upstream 303435 13399830 ~ 13400932 (+) True G95114
TU128288 lncRNA upstream 304750 13390823 ~ 13399617 (+) False LOC120564965
TU128278 lncRNA upstream 328699 13372444 ~ 13375668 (+) True LOC120564967
TU128368 lncRNA downstream 75781 13822853 ~ 13825269 (+) True G95173
TU128371 lncRNA downstream 75781 13822853 ~ 13824088 (+) False G95173
TU128376 lncRNA downstream 78385 13825457 ~ 13828481 (+) True G95177
TU128378 lncRNA downstream 83778 13830850 ~ 13835258 (+) True G95179
TU128472 lncRNA downstream 206077 13953149 ~ 13954884 (+) True G95236
XM_039810412.1 mRNA upstream 288368 13413361 ~ 13415999 (+) True insl5a
XM_039810238.1 mRNA upstream 304623 13390829 ~ 13399744 (+) True LOC120564965
XM_039810237.1 mRNA upstream 321620 13379398 ~ 13382747 (+) False LOC120564964
XM_039812047.1 mRNA upstream 335360 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 345242 13356372 ~ 13359125 (+) True LOC120565910
XM_039811498.1 mRNA downstream 49022 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA downstream 49141 13796213 ~ 13820008 (+) False swt1
XM_039811693.1 mRNA downstream 109962 13857034 ~ 13947979 (+) True hmcn1
XM_039811906.1 mRNA downstream 248423 13995495 ~ 13999954 (+) True ptgs2b
XM_039811908.1 mRNA downstream 277683 14024755 ~ 14028859 (+) True pdcb
XR_005640172.1 other upstream 321623 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 483995 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 603922 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2259834 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2455720 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 872286 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1063296 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1063296 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2573422 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4108565 17855637 ~ 17859152 (+) False nppc

Expression Profile